Gene
| Gene Model ID | pfu_aug2.0_1555.1_18402 |
|---|---|
| Locus | scaffold1555.1 : 95086 ... 126900 : + |
| To GenomeBrowser | scaffold1555.1:95086..126900 |
| Genes list of scaffold | scaffold1555.1 |
| Synonym | pfu_aug1.0_14274.1_32428 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear pore membrane glycoprotein 210-like | GO:0005488 GO:0005635 GO:0006810 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1555.1_18402.t1 | 2 | 1 | Peptidase_C48 | 320 | 344 | 2.6e-10 | 40.3 | 2.0 | 2000.0 | -1.8 |
| pfu_aug2.0_1555.1_18402.t1 | 3 | 1 | zf-C3HC4_2 | 358 | 400 | 6.9e-06 | 25.9 | 7.0e-09 | 6.9e-06 | 25.9 |
| pfu_aug2.0_1555.1_18402.t1 | 2 | 1 | zf-C3HC4 | 358 | 400 | 6.9e-06 | 25.6 | 7.0e-09 | 6.9e-06 | 25.6 |
| pfu_aug2.0_1555.1_18402.t1 | 3 | 1 | zf-B_box | 395 | 402 | 6.5e-09 | 35.5 | 2.9 | 2900.0 | -1.8 |
| pfu_aug2.0_1555.1_18402.t1 | 3 | 2 | zf-B_box | 432 | 464 | 6.5e-09 | 35.5 | 2.2e-07 | 0.00022 | 21.0 |
| pfu_aug2.0_1555.1_18402.t1 | 3 | 2 | zf-C3HC4_2 | 436 | 466 | 6.9e-06 | 25.9 | 0.00017 | 0.17 | 11.9 |
| pfu_aug2.0_1555.1_18402.t1 | 2 | 2 | zf-C3HC4 | 436 | 466 | 6.9e-06 | 25.6 | 0.023 | 23.0 | 4.7 |
| pfu_aug2.0_1555.1_18402.t1 | 3 | 3 | zf-B_box | 491 | 526 | 6.5e-09 | 35.5 | 4.1e-10 | 4.0e-07 | 29.8 |
| pfu_aug2.0_1555.1_18402.t1 | 3 | 3 | zf-C3HC4_2 | 503 | 515 | 6.9e-06 | 25.9 | 4.7 | 4700.0 | -2.3 |
| pfu_aug2.0_1555.1_18402.t1 | 6 | 1 | NHL | 511 | 521 | 1.4e-08 | 34.2 | 1.4 | 1400.0 | -0.5 |
| pfu_aug2.0_1555.1_18402.t1 | 6 | 2 | NHL | 745 | 766 | 1.4e-08 | 34.2 | 0.00012 | 0.12 | 12.4 |
| pfu_aug2.0_1555.1_18402.t1 | 6 | 3 | NHL | 781 | 796 | 1.4e-08 | 34.2 | 0.04 | 40.0 | 4.4 |
| pfu_aug2.0_1555.1_18402.t1 | 6 | 4 | NHL | 837 | 861 | 1.4e-08 | 34.2 | 0.014 | 14.0 | 5.8 |
| pfu_aug2.0_1555.1_18402.t1 | 6 | 5 | NHL | 885 | 904 | 1.4e-08 | 34.2 | 0.0027 | 2.6 | 8.1 |
| pfu_aug2.0_1555.1_18402.t1 | 6 | 6 | NHL | 926 | 940 | 1.4e-08 | 34.2 | 0.31 | 300.0 | 1.6 |
| pfu_aug2.0_1555.1_18402.t1 | 2 | 2 | Peptidase_C48 | 986 | 1114 | 2.6e-10 | 40.3 | 1.2e-12 | 1.2e-09 | 38.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1555.1_18402.t1 | gi|524892090|ref|XP_005102576.1| | PREDICTED: nuclear pore membrane glycoprotein 210-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1555.1_18402.t1 | gi|676467485|ref|XP_009057903.1| | hypothetical protein LOTGIDRAFT_182489, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1555.1_18402.t1 | gi|676489397|ref|XP_009064921.1| | hypothetical protein LOTGIDRAFT_236288 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1555.1_18402.t1 | gi|699643061|ref|XP_009894671.1| | PREDICTED: nuclear pore membrane glycoprotein 210-like [Picoides pubescens] | 4.00001e-40 |
Transcript
| Transcript ID | pfu_aug2.0_1555.1_18402.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1555.1_18402.t1 atgaatccagattggcagtcaacacaacaagaagttgccactttacagttggtgaatagcacagatggagaatgtgcctt ctctgctgttgtatctgcagtgtccaaatcgccgtatagaaaaacttctattgtactcgcagaaaatgaagtgacaggag agctattgaagtgtatagtgatagtcgaggccatccacaaatttgagatccagactacgacccgactcctttacttggag gattccccggaggaactcattatccaaggatatgatgaagaaggtaatgtgttctccagtctggcaggtatggagtttaa gtggagtcttctacctgatacaacagctgagcagaatgaaatcagtgagattctaagaataatcaagtttacggaatctc attacaccacgccgagacacatacggcatttagagaataaagggacccagggagatgctattttggtagaggggatgaga acaggaagtgcaatagtcagagcaaaggctagagactatgcatataaggatggctcagaatatcccattaaacctgtggt gagagggtctaggaaagtggaaatatacgaccccatcaaagttcatccagagttactgttcttcccttgggacccagaag tgcctgtgtctcaccaatatcagctaaaggcaacaggaggtagtggggagtatgtatggtcctctacagatgtgggagtg gcgggtgtcaatcttaaaggggagataactacaggaaagaagggacatactaatgtaactgctgcagataccaaaaacag ggcacatacaggaacggctgtgtttgcactttcttcgttaccatttatatttactggacgtttcaacagaatactatttt ctacaagtgctacaagaatggcatcgctagaagagtcaagcgatagctatccggagacattaagcttcaggggcgatact acaatgaaaactaatagaccgatttctgagatgatgagcaccattacggaggaagccgacacttaccgaagcgcttcggt tctaatgaagactgacaacaattttgattggtgcggcctgtgttacgatgaccataaagatccaaagatgctgccgtgtt tccatacttattgttctagatgcttggaattttacatagaacagactagtgattctaatgcctttttatgcccactttgt aagacgaaagtatgcatcccttctgacggtgctcagggtttcaaatctaacatctacttgaaagcgcttcaggcttctag agatatgacggaagaagaaactgtgtgcgacatttgcgaggatggtactatcgccgaatatttttgtctggaatgcaaac aaaacttttgcgagaaatgtagagggatgcatcttaagatgaatgtgtctaaatcacataatttgataaattcaaagaaa gtgggcgaaggggacaagtcgcccgcgcagtctctctgtgatgaacataaacaggaaatcaatctgttttgtcgccagtg caaagaagcgatttgtgtaacgtgcaagaaaaacaatcacgaattgcattcaacggatgatttgtcgaaatactcgaacg aaactaaaaacgaactgaatgaaaccattaattctttaaagagtcatataccggttctgaaggaaagactccaagaagtg gaaaattatcagaccggattcaaagtagtgcgagataagatcacaagaaatgttcgtgaaagagcctttgagttgcataa agaaattgacataatatctgagacatttttgaatgagatagaatctgacataaaactagaggaggatcgaaatctcattt tcaggacgaggataacggaagtgctccagtccgtgacctcgcaagtggcggttgcaaaacactgtattgactttggatcc gacgcagagattgcccatggacgggaaacagtaatgtatcatttgcagaccgcgcttaaaagtctacctgtaggattttt gccgaaaagaagtttgagtttcgtgccacccgaaacagatgcgactttgacgaagaaacaattcggttctctgtcgaaaa ttggcgagacgaaagtaaatcttcaagaagttggaagttaccgagttcctggcggtcatctgattcgtggaatagctccg gtatcgggcggcgtagctgggggacatcgtgtgcgtatcatcaaacttggacgtgacgttgacattgattacgttacttc tgacgagaaggacaacgtttatgtttcctgccgaaataacaagtgcgtcaagaaattgaataaagatatcaggattcgcg acatggtgattctgaatgattttccacgtgggatcgcattgtctcaaactggagatctgcttatatgtctgacgaagtcc aatacgtacgaaaattacaaatctacggacagaaatattgtcgcaaaatattctcgaatgggaagtaaagtaattgccga gttcgataaagctaaagcgcacatgaagtatccgcgtcgtatcgccgaaaatttgaacggcgacgtgtatgtgtcggacc acaaagagcaatgcattcacatcctgtcacccgatggaaagatcaaaagacgtttcacgggacccgactctcatccaatc ggagagccatgtggaatcacgtgtgatcgttatggaaatgtgatcatcgcagactataaaaataaccatgtttatttata tgatcaacaaggaaatttcctctctaatttactgacacctaaggacaatatcaaccagccgttttccgtagctgttgact cagagggattcttatgggttcatgttctacctccaaaagacatggagttcaaacctaagagggttgaggcacctgtagga acctacttggaactaccactggctgtgtatgcagaatataaggctgaagaacttggtccgtttctagagcctcttaatct accaaccaaacaatacgtcttcctcgctataaacgacaataatgatgccactcaagttggaggtacacattggagtctgt tgttgtacatcagaagcagacaggaattccgtcattacgactccagttcaggcagcaataaagaaacagccaaaaaactg gcgtataaacttcaacctcatgtccatgcacccatgggaagaatgaaattcatagagatggatgggcctcaacagcacaa tggttatgactgtggagtatttgtgatagctactgctgaacatctgtgtagagagtattgtgagggttttagcatatccc taaacgacactgtaactgcagacactatgcaagaaaaacgtgttaaaaccagagaactcatctataaaactgcagaagaa tttggtgctatatatccggttcagatgaaaactttgaatagctctgacgctggatga |
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Protein
| Protein ID | pfu_aug2.0_1555.1_18402.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1555.1_18402.t1 MNPDWQSTQQEVATLQLVNSTDGECAFSAVVSAVSKSPYRKTSIVLAENEVTGELLKCIVIVEAIHKFEIQTTTRLLYLE DSPEELIIQGYDEEGNVFSSLAGMEFKWSLLPDTTAEQNEISEILRIIKFTESHYTTPRHIRHLENKGTQGDAILVEGMR TGSAIVRAKARDYAYKDGSEYPIKPVVRGSRKVEIYDPIKVHPELLFFPWDPEVPVSHQYQLKATGGSGEYVWSSTDVGV AGVNLKGEITTGKKGHTNVTAADTKNRAHTGTAVFALSSLPFIFTGRFNRILFSTSATRMASLEESSDSYPETLSFRGDT TMKTNRPISEMMSTITEEADTYRSASVLMKTDNNFDWCGLCYDDHKDPKMLPCFHTYCSRCLEFYIEQTSDSNAFLCPLC KTKVCIPSDGAQGFKSNIYLKALQASRDMTEEETVCDICEDGTIAEYFCLECKQNFCEKCRGMHLKMNVSKSHNLINSKK VGEGDKSPAQSLCDEHKQEINLFCRQCKEAICVTCKKNNHELHSTDDLSKYSNETKNELNETINSLKSHIPVLKERLQEV ENYQTGFKVVRDKITRNVRERAFELHKEIDIISETFLNEIESDIKLEEDRNLIFRTRITEVLQSVTSQVAVAKHCIDFGS DAEIAHGRETVMYHLQTALKSLPVGFLPKRSLSFVPPETDATLTKKQFGSLSKIGETKVNLQEVGSYRVPGGHLIRGIAP VSGGVAGGHRVRIIKLGRDVDIDYVTSDEKDNVYVSCRNNKCVKKLNKDIRIRDMVILNDFPRGIALSQTGDLLICLTKS NTYENYKSTDRNIVAKYSRMGSKVIAEFDKAKAHMKYPRRIAENLNGDVYVSDHKEQCIHILSPDGKIKRRFTGPDSHPI GEPCGITCDRYGNVIIADYKNNHVYLYDQQGNFLSNLLTPKDNINQPFSVAVDSEGFLWVHVLPPKDMEFKPKRVEAPVG TYLELPLAVYAEYKAEELGPFLEPLNLPTKQYVFLAINDNNDATQVGGTHWSLLLYIRSRQEFRHYDSSSGSNKETAKKL AYKLQPHVHAPMGRMKFIEMDGPQQHNGYDCGVFVIATAEHLCREYCEGFSISLNDTVTADTMQEKRVKTRELIYKTAEE FGAIYPVQMKTLNSSDAG |
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