Gene
| Gene Model ID | pfu_aug2.0_1557.1_25000 |
|---|---|
| Locus | scaffold1557.1 : 69997 ... 78105 : - |
| To GenomeBrowser | scaffold1557.1:69997..78105 |
| Genes list of scaffold | scaffold1557.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calmodulin variant 1 | GO:0000922 GO:0002027 GO:0005509 GO:0005513 GO:0005634 GO:0005813 GO:0005876 GO:0010880 GO:0016301 GO:0016310 GO:0019901 GO:0019904 GO:0021762 GO:0030017 GO:0030801 GO:0031432 GO:0031996 GO:0031997 GO:0032465 GO:0032516 GO:0034704 GO:0035307 GO:0043274 GO:0044325 GO:0051343 GO:0055117 GO:0060316 GO:0070062 GO:0072542 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1557.1_25000.t1 | 2 | 1 | EF-hand_1 | 25 | 52 | 3.6e-12 | 44.6 | 1.8e-12 | 3.9e-09 | 35.1 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 1 | EF-hand_6 | 25 | 54 | 1.2e-10 | 40.3 | 6.3e-13 | 1.3e-09 | 37.0 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 1 | EF-hand_8 | 25 | 45 | 2.5e-08 | 33.3 | 1.8e-06 | 0.0038 | 16.8 |
| pfu_aug2.0_1557.1_25000.t1 | 1 | 1 | EF-hand_7 | 26 | 74 | 5.6e-11 | 42.4 | 3.5e-14 | 7.4e-11 | 42.0 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 1 | EF-hand_5 | 28 | 46 | 8.7e-10 | 37.4 | 2.0e-11 | 4.3e-08 | 32.1 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 2 | EF-hand_8 | 41 | 74 | 2.5e-08 | 33.3 | 4.8e-07 | 0.001 | 18.6 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 2 | EF-hand_1 | 61 | 74 | 3.6e-12 | 44.6 | 0.00091 | 1.9 | 7.9 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 2 | EF-hand_6 | 61 | 74 | 1.2e-10 | 40.3 | 0.24 | 510.0 | 1.0 |
| pfu_aug2.0_1557.1_25000.t1 | 2 | 2 | EF-hand_5 | 62 | 73 | 8.7e-10 | 37.4 | 0.022 | 46.0 | 3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1557.1_25000.t1 | gi|558192807|ref|XP_006129724.1| | PREDICTED: calmodulin-like isoform X3 [Pelodiscus sinensis] | 2.0e-19 |
| pfu_aug2.0_1557.1_25000.t1 | gi|197129749|gb|ACH46247.1| | putative calmodulin variant 4 [Taeniopygia guttata] | 3.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_1557.1_25000.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1557.1_25000.t1 atgatgtccatttacaagttcattgaggcatcgggattttatatcgttgcgaacgaaaagagcatctctcatgaatacag acaagcattccgtctatttgataaggatggggatggtacgatatccacagaggaactgggcgtggtcatacggtcccttg gtcagaacccttcagaggatgaactgcaggatctgatagaagaaatagatgtagacggtaataaatga |
|
Protein
| Protein ID | pfu_aug2.0_1557.1_25000.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1557.1_25000.t1 MMSIYKFIEASGFYIVANEKSISHEYRQAFRLFDKDGDGTISTEELGVVIRSLGQNPSEDELQDLIEEIDVDGNK |
|