Gene
| Gene Model ID | pfu_aug2.0_1557.1_25003 |
|---|---|
| Locus | scaffold1557.1 : 102162 ... 105015 : - |
| To GenomeBrowser | scaffold1557.1:102162..105015 |
| Genes list of scaffold | scaffold1557.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calmodulin-like protein 6a | GO:0004871 GO:0005509 GO:0005513 GO:0005515 GO:0005634 GO:0005829 GO:0005886 GO:0005982 GO:0009612 GO:0009909 GO:0019722 GO:0030048 GO:0051645 GO:0051646 GO:0060151 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1557.1_25003.t1 | 4 | 1 | EF-hand_1 | 10 | 36 | 1.7e-30 | 101.9 | 1.4e-08 | 1.8e-05 | 23.7 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 1 | EF-hand_6 | 11 | 37 | 9.2e-21 | 71.8 | 6.0e-07 | 0.00074 | 19.1 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 1 | EF-hand_5 | 11 | 32 | 3.4e-20 | 70.4 | 3.0e-07 | 0.00037 | 19.7 |
| pfu_aug2.0_1557.1_25003.t1 | 2 | 1 | EF-hand_7 | 11 | 70 | 1.5e-26 | 92.3 | 2.3e-15 | 2.9e-12 | 46.5 |
| pfu_aug2.0_1557.1_25003.t1 | 2 | 1 | EF-hand_9 | 14 | 71 | 4.0e-11 | 42.6 | 0.00046 | 0.57 | 10.1 |
| pfu_aug2.0_1557.1_25003.t1 | 2 | 1 | SPARC_Ca_bdg | 14 | 67 | 6.3e-07 | 29.4 | 0.014 | 18.0 | 5.4 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 1 | EF-hand_8 | 17 | 30 | 1.8e-20 | 72.2 | 0.046 | 57.0 | 3.4 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 2 | EF-hand_8 | 22 | 72 | 1.8e-20 | 72.2 | 1.5e-08 | 1.8e-05 | 24.2 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 2 | EF-hand_1 | 45 | 72 | 1.7e-30 | 101.9 | 2.7e-09 | 3.3e-06 | 25.9 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 2 | EF-hand_5 | 47 | 69 | 3.4e-20 | 70.4 | 0.00056 | 0.69 | 9.3 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 2 | EF-hand_6 | 54 | 72 | 9.2e-21 | 71.8 | 0.00012 | 0.14 | 12.0 |
| pfu_aug2.0_1557.1_25003.t1 | 2 | 2 | SPARC_Ca_bdg | 73 | 138 | 6.3e-07 | 29.4 | 1.4e-07 | 0.00017 | 21.6 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 3 | EF-hand_8 | 78 | 106 | 1.8e-20 | 72.2 | 6.7e-09 | 8.3e-06 | 25.3 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 3 | EF-hand_1 | 79 | 107 | 1.7e-30 | 101.9 | 3.0e-12 | 3.6e-09 | 35.2 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 3 | EF-hand_6 | 80 | 105 | 9.2e-21 | 71.8 | 4.2e-10 | 5.2e-07 | 29.0 |
| pfu_aug2.0_1557.1_25003.t1 | 2 | 2 | EF-hand_7 | 81 | 141 | 1.5e-26 | 92.3 | 1.2e-16 | 1.5e-13 | 50.6 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 3 | EF-hand_5 | 82 | 102 | 3.4e-20 | 70.4 | 3.1e-09 | 3.9e-06 | 25.9 |
| pfu_aug2.0_1557.1_25003.t1 | 2 | 2 | EF-hand_9 | 83 | 143 | 4.0e-11 | 42.6 | 9.1e-11 | 1.1e-07 | 31.6 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 4 | EF-hand_8 | 91 | 142 | 1.8e-20 | 72.2 | 4.1e-15 | 5.1e-12 | 45.2 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 4 | EF-hand_1 | 117 | 143 | 1.7e-30 | 101.9 | 1.9e-10 | 2.3e-07 | 29.6 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 4 | EF-hand_5 | 118 | 141 | 3.4e-20 | 70.4 | 6.4e-10 | 8.0e-07 | 28.1 |
| pfu_aug2.0_1557.1_25003.t1 | 4 | 4 | EF-hand_6 | 123 | 143 | 9.2e-21 | 71.8 | 1.9e-06 | 0.0024 | 17.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1557.1_25003.t1 | gi|586759762|ref|XP_006854084.1| | 5.0e-31 | |
| pfu_aug2.0_1557.1_25003.t1 | gi|168026655|ref|XP_001765847.1| | predicted protein [Physcomitrella patens] | 3.0e-30 |
| pfu_aug2.0_1557.1_25003.t1 | gi|115524|sp|P13868.2|CALM1_SOLTU | Calmodulin-1 | 4.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_1557.1_25003.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1557.1_25003.t1 atgtcagacgctttcgcgggagaagtttgggaagacctatttataagcgcagacagggacagggatgggttcttgtctgt acaggagctgggtaacgccatgaagtcttgtgggtataactacagcgatgtggaactacaagatatgatcctagatgccg atgaaaacggtgacggaaggatggactacagagaattcgtctctctaatgacaaagaaaacagcaagaaagggagaaata tcggacatgttcaaaaagtttgacacggataaaaacggatttattgactttaaggaattgaaagcaggcatggaatcgtt aactggaaataaaatgccagatagtgacgtagaagacatgctggaggaagcggatttagatggcgacggaagaataaact tcgaagaatttgaaagaatgatgaacaaggattactccggcaatgattga |
|
Protein
| Protein ID | pfu_aug2.0_1557.1_25003.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1557.1_25003.t1 MSDAFAGEVWEDLFISADRDRDGFLSVQELGNAMKSCGYNYSDVELQDMILDADENGDGRMDYREFVSLMTKKTARKGEI SDMFKKFDTDKNGFIDFKELKAGMESLTGNKMPDSDVEDMLEEADLDGDGRINFEEFERMMNKDYSGND |
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