Gene
| Gene Model ID | pfu_aug2.0_1557.1_25005 |
|---|---|
| Locus | scaffold1557.1 : 131736 ... 143378 : + |
| To GenomeBrowser | scaffold1557.1:131736..143378 |
| Genes list of scaffold | scaffold1557.1 |
| Synonym | pfu_aug1.0_12067.1_03164 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-9 | GO:0005216 GO:0006811 GO:0016020 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1557.1_25005.t1 | 1 | 1 | Neur_chan_LBD | 21 | 225 | 0.0 | 190.5 | 0.0 | 0.0 | 189.7 |
| pfu_aug2.0_1557.1_25005.t1 | 2 | 1 | Neur_chan_memb | 232 | 390 | 3.7e-26 | 92.4 | 3.8e-26 | 2.8e-22 | 79.7 |
| pfu_aug2.0_1557.1_25005.t1 | 2 | 2 | Neur_chan_memb | 392 | 433 | 3.7e-26 | 92.4 | 1.7e-06 | 0.013 | 15.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1557.1_25005.t1 | gi|558191603|ref|XP_006129556.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-9 [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1557.1_25005.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1557.1_25005.t1 atgtcaattaacggcatattctttggtttttacccagtgaatgccggcacggactatgctactcaggtgaccacggcagt gttgaccggttatgacactgcagttcgaccatactgtgatggagccaccaccaatgtcaccatagatatagccattagac aagtcatagatctggatgagccgaaccaagtattaacgcttagtgtttggatgagactgagttggaaagattgccgcttg tcctggaactctagcgcaaatggagacttggggaacctgattcttccctacaagaagatttgggtccctgaccttgcctt gtttgatagcgttgccacagagtttcacggacttgaaacatctcgagcaaacatttactcggacggctccgtatactaca atttcccgtccatattagaatgcatttgtcctgttaacgtgcataagtttccatttgacactcaaaactgtgaacttaag cttggatcttgggcatatcatggcggcgaaatcgacatattctttaaaaacccgaatggagacctggcaacgtctaagag taacgttgagtgggatattatgtcatttccggtcgtcaaaaacgtcgtatattatgcctgctgtgctgacccatatcctg acctcacatacaccgtcgtgctgaaaaggaaaccatctttctacgtaaacaacatattacttccttcctcactgatttgc gcaatcgcattgcttgggttcttccttccggtcgagtccggggagaaagtgtccttacaaatcactgtgatgttgtcctt ggcagttttccagcttcttgttgccgataaattaccaccagattcagacaaaacgccatatatttccacatacttcaact tcggcctgttcatcgtgggcacggcatgtgttttggcggtagttgtgatctttgtttattataaagggaaccaacccata ccacgtgtaatcaggattctatttcttaaatacttttcgaagattacatttatttatgtgccacaacaaaccaaggattc tttacgggaacaaacgatgtttgtctctagaaagaagaaggacaatataatccacgtatcggttaccgaggtaacggaga aatctgacaaatccaaactagcagagaaatccaaaccggactcaagcgaaataacaagtacatcaacggactttgacgag gacctaacgacagaagagtggaaagtcatagccaatattattgacagactgtctttttatctcttcgtactcttattagt gggaggaaacatttctatcatatttcaaatgtccaattaa |
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Protein
| Protein ID | pfu_aug2.0_1557.1_25005.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1557.1_25005.t1 MSINGIFFGFYPVNAGTDYATQVTTAVLTGYDTAVRPYCDGATTNVTIDIAIRQVIDLDEPNQVLTLSVWMRLSWKDCRL SWNSSANGDLGNLILPYKKIWVPDLALFDSVATEFHGLETSRANIYSDGSVYYNFPSILECICPVNVHKFPFDTQNCELK LGSWAYHGGEIDIFFKNPNGDLATSKSNVEWDIMSFPVVKNVVYYACCADPYPDLTYTVVLKRKPSFYVNNILLPSSLIC AIALLGFFLPVESGEKVSLQITVMLSLAVFQLLVADKLPPDSDKTPYISTYFNFGLFIVGTACVLAVVVIFVYYKGNQPI PRVIRILFLKYFSKITFIYVPQQTKDSLREQTMFVSRKKKDNIIHVSVTEVTEKSDKSKLAEKSKPDSSEITSTSTDFDE DLTTEEWKVIANIIDRLSFYLFVLLLVGGNISIIFQMSN |
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