Gene
| Gene Model ID | pfu_aug2.0_1562.1_08444 |
|---|---|
| Locus | scaffold1562.1 : 11896 ... 30112 : + |
| To GenomeBrowser | scaffold1562.1:11896..30112 |
| Genes list of scaffold | scaffold1562.1 |
| Synonym | pfu_aug1.0_1389.1_07928 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1562.1_08444.t2 | 1 | 1 | GCFC | 207 | 357 | 5.0e-27 | 94.9 | 6.5e-30 | 1.6e-26 | 93.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1562.1_08444.t2 | gi|677981723|ref|XP_009073392.1| | PREDICTED: PAX3- and PAX7-binding protein 1, partial [Acanthisitta chloris] | 0.0 |
| pfu_aug2.0_1562.1_08444.t2 | gi|664750708|ref|XP_008532781.1| | PREDICTED: PAX3- and PAX7-binding protein 1, partial [Equus przewalskii] | 0.0 |
| pfu_aug2.0_1562.1_08444.t2 | gi|704236809|ref|XP_010159182.1| | PREDICTED: PAX3- and PAX7-binding protein 1, partial [Eurypyga helias] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1562.1_08444.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1562.1_08444.t1 atgcagatcaaccagtataacggataccaaccacagaccacatactccaatcacaatacaaactcgacatttgaaccttt ttctgccatggcagttgctgggcaacaggtaaccatggatgccatcaggaaaaggctcaaggataggttggattcaatgg atgaagtacataggaggcacgtgaatgacagagacacactggtgactgatatagacgactcggacaaaagtattacatcc tgcgaagggaacatcaaaagcttggaggagcgataccgcttcttccaagaaatgagggggtatgtgagagacttggttga atgtctcaatgagaaggtacctagaatcaatgaccttgagcagagaatgctcaatctgtggcgtaatcgagcacttaaat tactgaacaggcgtcagcaggatgtccgagatcagtgtcaggattatatgacaaataaagcacagctacagatggaaaat tccgaagctcagttgagacagagaagggtggcggagagagaggcacgcagagcaaggaggcgtcgggcaagagagggcaa ggatatcgtaggtcatcacgatggactgtcatcagatgacgaggaaaatcagtctgaacttacaaaatttaacgtggaga aagacagtattacaggtggtatagagcgtgtatttgaggatgtaatggaggactttagtcaggtacagtctgtacgagag agattcgaggactggaagtacaagtacggagagacatacaaagaggcgtacatcggactgtgtctacccaaactctataa tccctatgtccggatgcagctcatacaatggaatccacttgaggcacatagcagagactttgaggaaactagttggtttg aaactctggtattttatggttttaaacgagaagacaccataagtaaacaggatgatgatgtaaggttattaccaggcatt gtagagaaagtattacttccgagactcacaacaattgcagagacgatatgggatcctttatcaacaactcagactgcccg actggttaacaccttacagaaaatcatcaaagattaccccaccattcacgctgaaagcaaaaacactcagactctccttc atgccattgccaaacgaatgcagaaaacattagatgacgatgtgttcatgccactttatccaaaatctgttattgagaat cgttcatcgggttcttcagttttctttcatcgacagctgtggacctgcattaagttacttggaaacgttctcagctggaa cggaattttggcatccagtgttctccatggtttggctctagacggtctacttaatcgttacgtcatattaggtctctgta actctgtactcaacagagaaactctgcagaaatgtcaatccattatatcaacatttccaaaggaatggttctcagacctg gatgatgataaaaccatgccacaaatggagaacctagccaagtatctggtgtcggcagcaaacacaatattcaacgaaag tcaaaaccaacgggaacccgagaaaaaagaatctaaggaacatgtcaaacagatcagtaagatgcttgttaacatccacg ccatggagaaggcagccaatcttcctcactga |
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| Transcript ID | pfu_aug2.0_1562.1_08444.t2 |
| Definition | - |
>pfu_aug2.0_1562.1_08444.t2 atggcagttgctgggcaacaggtaaccatggatgccatcaggaaaaggctcaaggataggttggattcaatggatgaagt acataggaggcacgtgaatgacagagacacactggtgactgatatagacgactcggacaaaagtattacatcctgcgaag ggaacatcaaaagcttggaggagcgataccgcttcttccaagaaatgagggggtatgtgagagacttggttgaatgtctc aatgagaaggtacctagaatcaatgaccttgagcagagaatgctcaatctgtggcgtaatcgagcacttaaattactgaa caggcgtcagcaggatgtccgagatcagtgtcaggattatatgacaaataaagcacagctacagatggaaaattccgaag ctcagttgagacagagaagggtggcggagagagaggcacgcagagcaaggaggcgtcgggcaagagagggcaaggatatc gtaggtcatcacgatggactgtcatcagatgacgaggaaaatcagtctgaacttacaaaatttaacgtggagaaagacag tattacaggtggtatagagcgtgtatttgaggatgtaatggaggactttagtcaggtacagtctgtacgagagagattcg aggactggaagtacaagtacggagagacatacaaagaggcgtacatcggactgtgtctacccaaactctataatccctat gtccggatgcagctcatacaatggaatccacttgaggcacatagcagagactttgaggaaactagttggtttgaaactct ggtattttatggttttaaacgagaagacaccataagtaaacaggatgatgatgtaaggttattaccaggcattgtagaga aagtattacttccgagactcacaacaattgcagagacgatatgggatcctttatcaacaactcagactgcccgactggtt aacaccttacagaaaatcatcaaagattaccccaccattcacgctgaaagcaaaaacactcagactctccttcatgccat tgccaaacgaatgcagaaaacattagatgacgatgtgttcatgccactttatccaaaatcgggattcccgttgttattga gaatcgttcatcgggttcttcagttttctttcatcgacagctgtggacctgcattaagttacttggaaacgttctcagct ggaacggaattttggcatccagtgttctccatggtttggctctag |
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Protein
| Protein ID | pfu_aug2.0_1562.1_08444.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1562.1_08444.t1 MQINQYNGYQPQTTYSNHNTNSTFEPFSAMAVAGQQVTMDAIRKRLKDRLDSMDEVHRRHVNDRDTLVTDIDDSDKSITS CEGNIKSLEERYRFFQEMRGYVRDLVECLNEKVPRINDLEQRMLNLWRNRALKLLNRRQQDVRDQCQDYMTNKAQLQMEN SEAQLRQRRVAEREARRARRRRAREGKDIVGHHDGLSSDDEENQSELTKFNVEKDSITGGIERVFEDVMEDFSQVQSVRE RFEDWKYKYGETYKEAYIGLCLPKLYNPYVRMQLIQWNPLEAHSRDFEETSWFETLVFYGFKREDTISKQDDDVRLLPGI VEKVLLPRLTTIAETIWDPLSTTQTARLVNTLQKIIKDYPTIHAESKNTQTLLHAIAKRMQKTLDDDVFMPLYPKSVIEN RSSGSSVFFHRQLWTCIKLLGNVLSWNGILASSVLHGLALDGLLNRYVILGLCNSVLNRETLQKCQSIISTFPKEWFSDL DDDKTMPQMENLAKYLVSAANTIFNESQNQREPEKKESKEHVKQISKMLVNIHAMEKAANLPH |
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| Protein ID | pfu_aug2.0_1562.1_08444.t2 |
| Definition | - |
>pfu_aug2.0_1562.1_08444.t2 MAVAGQQVTMDAIRKRLKDRLDSMDEVHRRHVNDRDTLVTDIDDSDKSITSCEGNIKSLEERYRFFQEMRGYVRDLVECL NEKVPRINDLEQRMLNLWRNRALKLLNRRQQDVRDQCQDYMTNKAQLQMENSEAQLRQRRVAEREARRARRRRAREGKDI VGHHDGLSSDDEENQSELTKFNVEKDSITGGIERVFEDVMEDFSQVQSVRERFEDWKYKYGETYKEAYIGLCLPKLYNPY VRMQLIQWNPLEAHSRDFEETSWFETLVFYGFKREDTISKQDDDVRLLPGIVEKVLLPRLTTIAETIWDPLSTTQTARLV NTLQKIIKDYPTIHAESKNTQTLLHAIAKRMQKTLDDDVFMPLYPKSGFPLLLRIVHRVLQFSFIDSCGPALSYLETFSA GTEFWHPVFSMVWL |
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