Gene
| Gene Model ID | pfu_aug2.0_1562.1_08446 |
|---|---|
| Locus | scaffold1562.1 : 72626 ... 90584 : + |
| To GenomeBrowser | scaffold1562.1:72626..90584 |
| Genes list of scaffold | scaffold1562.1 |
| Synonym | pfu_aug1.0_6715.1_60087 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tyrosine--trna cytoplasmic | GO:0000049 GO:0004822 GO:0004831 GO:0005524 GO:0005634 GO:0005829 GO:0006428 GO:0006437 GO:0006974 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1562.1_08446.t1 | 2 | 1 | tRNA-synt_1b | 46 | 336 | 0.0 | 296.4 | 0.0 | 0.0 | 234.1 |
| pfu_aug2.0_1562.1_08446.t1 | 3 | 1 | Tup_N | 93 | 141 | 2.5e-06 | 27.5 | 0.65 | 1600.0 | -0.7 |
| pfu_aug2.0_1562.1_08446.t1 | 3 | 2 | Tup_N | 332 | 353 | 2.5e-06 | 27.5 | 8.8e-05 | 0.22 | 11.7 |
| pfu_aug2.0_1562.1_08446.t1 | 2 | 2 | tRNA-synt_1b | 361 | 470 | 0.0 | 296.4 | 4.4e-20 | 1.1e-16 | 60.8 |
| pfu_aug2.0_1562.1_08446.t1 | 3 | 3 | Tup_N | 466 | 489 | 2.5e-06 | 27.5 | 8.5e-05 | 0.21 | 11.7 |
| pfu_aug2.0_1562.1_08446.t1 | 1 | 1 | tRNA_bind | 489 | 580 | 3.9e-22 | 77.9 | 3.6e-25 | 9.0e-22 | 76.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1562.1_08446.t1 | gi|573887259|ref|XP_006631409.1| | PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1562.1_08446.t1 | gi|664725865|ref|XP_008520073.1| | PREDICTED: tyrosine--tRNA ligase, cytoplasmic [Equus przewalskii] | 0.0 |
| pfu_aug2.0_1562.1_08446.t1 | gi|530625324|ref|XP_005302208.1| | PREDICTED: tyrosine--tRNA ligase, cytoplasmic [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_1562.1_08446.t1 | gi|395857875|ref|XP_003801306.1| | PREDICTED: tyrosine--tRNA ligase, cytoplasmic isoform X1 [Otolemur garnettii] | 0.0 |
| pfu_aug2.0_1562.1_08446.t1 | gi|478503315|ref|XP_004425965.1| | PREDICTED: LOW QUALITY PROTEIN: tyrosine--tRNA ligase, cytoplasmic [Ceratotherium simum simum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1562.1_08446.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1562.1_08446.t1 atggctgtcaacggtatagacaagaatatggcagatttaagcgtgtcatcaaagtcacctagtgataaacttcatctaat taaaaggaatctccaggaaataataggtgaagaaaatctgaaaaaggttcttgctgaaagagatctgaaagtatactggg gaacagcaacaacaggaaagcctcatgtggcatactttgtgccgatgtcaaaaattgccgactttttacaagctggttgt gaggtcacaattctgtttgctgatcttcatgcataccttgataatatgaaggctccatggagcttgctcaacctgcgtgt tcagtattacgagaaagtcatcaaagccatgctcaagtccattaacgtgccgttggataaattgaagtttgtgaaaggga cagattaccagcttagccaagagtacacgttagatgtatacagattatcctcgatggtcacggagcacgatgccaagaaa gcaggagctgaggtggtcaaacaagtagatcatccactgctcagtgggctgctgtacccaggactccaggcactggatga ggagtaccttaaggtagatgcccagtttggtggtgtggaccaaagaaaaatcttcacatttgccgaaaagtacctaccac atttaggatacaccaaaagaatacacttgatgaatccaatggtaccaggattaactggtagcaagatgagctcttctgag gaagattccaaaatagatttactggactcggcggcacaagtcaagaaaaaattgggcaaggcgttttgtgaaccaggaaa cgttacagacaatggtgtgctgtcattttgtaaacatgtgttgtttcctatcaagacgaaagatggattcttggttaaga gagatgaagccaatggcgggaacaccctgtacaagacatacgatgatttagagcaggcttttgcaaaagaggaggtgcat ccaggggacctgaaggcttcagtggaggtgtacctgaatgagctcttggatccagtacgtaaagagtttgatacacctga gaataaaaaactcagcagtcaagcttacccggtagaaaagaaaatacctggattaactggtagtaagatgagctcatctg aagaagattccaaaatagatttactggactctgcagcacaagtcaagaaaaaacttggcaaggcattttgtgaaccagga aacattacagacaatggtgtgctgtcattttgtaaacatgtgttgtttcctatcaagacaaaagatggattcttggttaa gagagatgaagccaatggtgggaacaccctgtacaagacatacgatgatttagagcaggcttttgcaaaagaggaggtgc atccaggggacctgaaggcttcagtggaggtgtacctgaatgagctcctggatccagtacgtaaagagtttgatacacct gagaataaaaaactcagcagtcaagcttacccgcaccccgatgctgaatctttgttcatagagacagtggacgtcggaga ggaggcaccaaggacggtggtcagcggcttggcgggactataccccatggaaaagttacaagaccgtctgggggtcttca tgtgcaatctcaaaccagtcaaaatgaggggtgttgagtctagggcaatgctaatgtgtgcttcctttatttcaaatatc agtgatgatccaagggcagtagagccattagatccaccagaggggagtgtaccgggagagagagtcgtctttgagggtta tgagagtggcaagcctgacgaacagctcaatcctaaaaagaaagtatgggaaaaattacagcctgatttacgtacaagtg gggaaggatgtgccgaatggcaaggaaatataatgaaaacagagaaaggtccagtcaaagcagcgacattaaaaggagtt ccgattaggtga |
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Protein
| Protein ID | pfu_aug2.0_1562.1_08446.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1562.1_08446.t1 MAVNGIDKNMADLSVSSKSPSDKLHLIKRNLQEIIGEENLKKVLAERDLKVYWGTATTGKPHVAYFVPMSKIADFLQAGC EVTILFADLHAYLDNMKAPWSLLNLRVQYYEKVIKAMLKSINVPLDKLKFVKGTDYQLSQEYTLDVYRLSSMVTEHDAKK AGAEVVKQVDHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFAEKYLPHLGYTKRIHLMNPMVPGLTGSKMSSSE EDSKIDLLDSAAQVKKKLGKAFCEPGNVTDNGVLSFCKHVLFPIKTKDGFLVKRDEANGGNTLYKTYDDLEQAFAKEEVH PGDLKASVEVYLNELLDPVRKEFDTPENKKLSSQAYPVEKKIPGLTGSKMSSSEEDSKIDLLDSAAQVKKKLGKAFCEPG NITDNGVLSFCKHVLFPIKTKDGFLVKRDEANGGNTLYKTYDDLEQAFAKEEVHPGDLKASVEVYLNELLDPVRKEFDTP ENKKLSSQAYPHPDAESLFIETVDVGEEAPRTVVSGLAGLYPMEKLQDRLGVFMCNLKPVKMRGVESRAMLMCASFISNI SDDPRAVEPLDPPEGSVPGERVVFEGYESGKPDEQLNPKKKVWEKLQPDLRTSGEGCAEWQGNIMKTEKGPVKAATLKGV PIR |
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