Gene
Gene Model ID | pfu_aug2.0_1574.1_15123 |
---|---|
Locus | scaffold1574.1 : 113346 ... 116604 : + |
To GenomeBrowser | scaffold1574.1:113346..116604 |
Genes list of scaffold | scaffold1574.1 |
Synonym | pfu_aug1.0_4032.1_44843 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1574.1_15123.t1 | 2 | 1 | HLH | 33 | 48 | 6.7e-14 | 51.3 | 0.033 | 240.0 | 1.4 |
pfu_aug2.0_1574.1_15123.t1 | 2 | 2 | HLH | 63 | 116 | 6.7e-14 | 51.3 | 9.1e-18 | 6.7e-14 | 51.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1574.1_15123.t1 | gi|573892377|ref|XP_006633944.1| | PREDICTED: pancreas transcription factor 1 subunit alpha-like [Lepisosteus oculatus] | 8.0e-09 |
pfu_aug2.0_1574.1_15123.t1 | gi|676468331|ref|XP_009058175.1| | hypothetical protein LOTGIDRAFT_153930 [Lottia gigantea] | 1.0e-08 |
pfu_aug2.0_1574.1_15123.t1 | gi|170593369|ref|XP_001901437.1| | Helix-loop-helix DNA-binding domain containing protein [Brugia malayi] | 3.0e-08 |
pfu_aug2.0_1574.1_15123.t1 | gi|525314070|ref|NP_001266199.1| | uncharacterized protein LOC100637004 [Amphimedon queenslandica] | 6.0e-08 |
Transcript
Transcript ID | pfu_aug2.0_1574.1_15123.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1574.1_15123.t1 atgtcgatggaaaaggtagatattgagacaaaaattgatgataaggaactatcagatgtagaacctgttgatttgacttc tgaatcaaatgaaattaggaaaaagattaatgatagaaagaagaaaagagtcaagaacatgaagaaattcgaaagtttga atataagtgaagaagaaatggaagaaaggagacggtcagcaaatgatctggaaaggaggaggatgaaaaaaatgtccgaa gccctagacgatctcagaaagtgtattcctcaacatcttcatctgtatcatcgtagaatgtctaaaattcggactttgcg acttgcgacgtcgtacatacgggcacttagtgacatgttacagaaggacattatgagagagatggtacagaatgcatata gaaatattcagtacaatttgatccagtcaccagtggtatatcccggaataacggttaatgtggcgccttcccccaccacc ggaactcctaacttaggacattcctaccacactccccctaggagacaacttaatttctctcagggacagggatattcccc ctctacacagtacctcccgacaccagatcagaccctaggaccacacccagcataccaaacacctatcccacccagtatag cgttctaccgtacctccgctcagagacgctggcacacacctagccacaccctttcctccccgcctgaggaggatgagtac cccagtaagccttacgaggatccgtcagtacagggagatgggagggtaccagatcaggagttctcggggaaaagttcctg tcgatatgggactatgtatgtagaaggggtctacccactcccggacagtaaacaaagtgatggataa |
Protein
Protein ID | pfu_aug2.0_1574.1_15123.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1574.1_15123.t1 MSMEKVDIETKIDDKELSDVEPVDLTSESNEIRKKINDRKKKRVKNMKKFESLNISEEEMEERRRSANDLERRRMKKMSE ALDDLRKCIPQHLHLYHRRMSKIRTLRLATSYIRALSDMLQKDIMREMVQNAYRNIQYNLIQSPVVYPGITVNVAPSPTT GTPNLGHSYHTPPRRQLNFSQGQGYSPSTQYLPTPDQTLGPHPAYQTPIPPSIAFYRTSAQRRWHTPSHTLSSPPEEDEY PSKPYEDPSVQGDGRVPDQEFSGKSSCRYGTMYVEGVYPLPDSKQSDG |