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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1588.1_28395
Locus scaffold1588.1 : 99967 ... 114485 : -
To GenomeBrowser scaffold1588.1:99967..114485
Genes list of scaffold scaffold1588.1
Synonym pfu_aug1.0_17701.1_39980

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1588.1_28395.t1 5 1 WD40 96 123 5.4e-10 38.7 0.00017 0.62 10.0
pfu_aug2.0_1588.1_28395.t1 5 2 WD40 138 164 5.4e-10 38.7 0.015 54.0 3.8
pfu_aug2.0_1588.1_28395.t1 5 3 WD40 257 277 5.4e-10 38.7 0.0038 14.0 5.7
pfu_aug2.0_1588.1_28395.t1 5 4 WD40 306 332 5.4e-10 38.7 6.2e-07 0.0023 17.7
pfu_aug2.0_1588.1_28395.t1 5 5 WD40 339 375 5.4e-10 38.7 0.0012 4.4 7.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1588.1_28395.t1 gi|699254194|ref|XP_009861346.1| PREDICTED: WD repeat-containing protein 64-like [Ciona intestinalis] 0.0

Transcript
Transcript IDpfu_aug2.0_1588.1_28395.t1
Definition-
>pfu_aug2.0_1588.1_28395.t1
atgtcggagttaacagagcagccgggggacgggctggctcgtccctacactgtggggacatttcaacataaactggacaa
atttcaggacttcattaaggatataacattccaagatgtcgaggcgactcctgaagaaagacgtcaaatgatcacagagc
tgtttggctattttcaatcgactgccgaggagcatgaggaaatagctgttggcgaggaggtcagcgtctttactgtatcc
aagaggaggcgagtaggagaggctgccggagagaaaacccgacgagatactgtgcaatgtttacgatatgtgccgtcttt
agactgttatgtttctgcatctcaaaaaggagccatttgtatctggtccacaggtttgaagttacaaagctgtgtagata
taaatgaagcagcatgggtgacaggatgtgattatttgccaacattacgcagagctgtatgctgtacagagagaagtatt
gtagtttgggataatcggtccaaagggaaaaaccagcatgtcttctctatcaaacctttcgagaactcccctcagtgtat
atgccatgttcccactacatctaatatacatgaggacattatattatttggagatgaccagggatatattaatgtgttaa
aattggccagcaaagacttgacgaccaaaaattccaaagatgctgaaaaaattcaaaatactcaacctttaccaaatttt
cctatagagccagataaattaacaaataagatagtgaagaggaagattcaccatgactgggtactacaggtgaagtactt
cccggagttacggtgctttgcttcatgctccccacatagtagacagtcgtttgtgctagaggaactagatcgactatatg
atgatggggaagtgagaggtgtatctatatataaaggtgtgaactgttttgattactgtgccaaggccaacataattgcc
actgggggtgtagacaaagtcatcagggtgtggcatcctcatatattctccagacccacagggaagctgatgggccattt
atttacaattgttgatatttgttcaaatgagaaagatcaacatttaatcagcttgtctacagccagggtgttcagagtat
gggatatacacacactcacatgtctacagaatactcctgtgtattcacagacaacgaggaacgaccaggtgaaaaaagaa
tatactccatggtgtttgacactaaacatgagaggcttctcacagggtcctcagtga

Protein
Protein IDpfu_aug2.0_1588.1_28395.t1
Definition-
>pfu_aug2.0_1588.1_28395.t1
MSELTEQPGDGLARPYTVGTFQHKLDKFQDFIKDITFQDVEATPEERRQMITELFGYFQSTAEEHEEIAVGEEVSVFTVS
KRRRVGEAAGEKTRRDTVQCLRYVPSLDCYVSASQKGAICIWSTGLKLQSCVDINEAAWVTGCDYLPTLRRAVCCTERSI
VVWDNRSKGKNQHVFSIKPFENSPQCICHVPTTSNIHEDIILFGDDQGYINVLKLASKDLTTKNSKDAEKIQNTQPLPNF
PIEPDKLTNKIVKRKIHHDWVLQVKYFPELRCFASCSPHSRQSFVLEELDRLYDDGEVRGVSIYKGVNCFDYCAKANIIA
TGGVDKVIRVWHPHIFSRPTGKLMGHLFTIVDICSNEKDQHLISLSTARVFRVWDIHTLTCLQNTPVYSQTTRNDQVKKE
YTPWCLTLNMRGFSQGPQ

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