Gene
| Gene Model ID | pfu_aug2.0_1590.1_01713 |
|---|---|
| Locus | scaffold1590.1 : 29916 ... 67915 : - |
| To GenomeBrowser | scaffold1590.1:29916..67915 |
| Genes list of scaffold | scaffold1590.1 |
| Synonym | pfu_aug1.0_24582.1_11630 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1590.1_01713.t1 | 2 | 1 | F5_F8_type_C | 13 | 72 | 9.1e-14 | 51.4 | 0.0016 | 3.9 | 7.3 |
| pfu_aug2.0_1590.1_01713.t1 | 2 | 2 | F5_F8_type_C | 103 | 233 | 9.1e-14 | 51.4 | 5.1e-14 | 1.3e-10 | 41.2 |
| pfu_aug2.0_1590.1_01713.t1 | 1 | 1 | Rifin_STEVOR | 265 | 295 | 4.4e-06 | 26.5 | 5.0e-09 | 1.2e-05 | 25.0 |
| pfu_aug2.0_1590.1_01713.t1 | 2 | 1 | Y_phosphatase | 421 | 518 | 0.0 | 189.4 | 1.1e-32 | 2.7e-29 | 102.1 |
| pfu_aug2.0_1590.1_01713.t1 | 2 | 2 | Y_phosphatase | 594 | 805 | 0.0 | 189.4 | 2.5e-28 | 6.3e-25 | 87.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1590.1_01713.t1 | gi|585150898|ref|XP_006727892.1| | PREDICTED: receptor-type tyrosine-protein phosphatase zeta [Leptonychotes weddellii] | 4.99997e-41 |
| pfu_aug2.0_1590.1_01713.t1 | gi|560968472|ref|XP_006206606.1| | PREDICTED: receptor-type tyrosine-protein phosphatase S [Vicugna pacos] | 1.0e-39 |
| pfu_aug2.0_1590.1_01713.t1 | gi|260815523|ref|XP_002602522.1| | hypothetical protein BRAFLDRAFT_93828 [Branchiostoma floridae] | 7.0e-37 |
| pfu_aug2.0_1590.1_01713.t1 | gi|524888281|ref|XP_005100716.1| | PREDICTED: receptor-type tyrosine-protein phosphatase kappa-like [Aplysia californica] | 3.0e-35 |
| pfu_aug2.0_1590.1_01713.t1 | gi|532093199|ref|XP_005332281.1| | PREDICTED: receptor-type tyrosine-protein phosphatase S [Ictidomys tridecemlineatus] | 2.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_1590.1_01713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1590.1_01713.t1 atggatctttcgaatattttagaatctaggaaaagattagctggatattctgtatctgtgtcaattggcggaaatgatac acattacagaaaatgttacgattatggtactccggacgacttacctgatgtgacaaaggtgcagatagctgaatgcagta caccattacgaggacgctacgttataattacccaaagcagagaaaaaagcaagacatatcctgcaaactacagtagaaac gccgtcttgcagctgtgtgatgtcgaggtttttgttgatgctagtcaagtggcaacacataagccggcaaaacaaagctc ccgctttaacaatattttcatcgccagtaatgctgttgatggaagtatgggggataagtacatgaacaactgcagtcata ctgctggtggaaaaagtacagcttggtggcgtgtaaatcttgaaaagctttaccttattcaaagtattgtcatctatcct cgaccacacaacgttacggagactcagggaagattcgccggtttttctttatcggtgtctgataaagaaaatggaagcta ccatgagtgttttgattacggcaagtctgggcctataccagatgttactgtgaggcatgtggtaaactgcttcccgcctg aagaaggacaatacgttaaaattgaaaacgaaagagataatggaccatacgcaactgactatagcaaagaggcgtatgtc aatttatgcgaagttgagattatagctcaaggaattcacgataataaagatgatggtgacgatgaaggcgggtcgtccgt agcaggtccaattattgcagttttagtgattttattagtgatactaattattgcactgattttatataaaagaaggaaaa aaagtgacccaaaaagagatcctctgtcagggaccctatccgcaatgactcccattggctcaggggcaaatgcaaccgct caaatgtctggggttaaggtggctaacagatggtcgaataaaagtgatgaagggaaaaggcatgtatcatctaacagttt gttgacaaatgattacatgaatgaagcaacatactgcaacactgcccgcaacctatcaggaatcaatgtagaggatttca aaaaatatgtgtcgataaagaaggagcagaaaaaatttgtagaggaattttccggcatcccctatggcgagtgtcatgca gctacaatcgccagacttcccggaaatatgtctaaaaatagatataaaacgacatttccatgaccaacaggcagcacctt agcagacttctggcagatggtttggcaagaaaatattgaaatcatagtgatgcttaccaatctgaaagagggaactaaga aaaagtgcgacaaatattggcctgaacctaacaaaggtcagggatatggacatctgaaattgactttgaaagatgaaaga acgttctcttactatgttttacgtgaaatggatatggaaaatacgaagttgcaggctaagagaaagatcttacagttcca ctataccacttggcctgaccatggcacccctgatcctttccttctgggacagtatgagatgctgcatgaagctttgattg agagtttccaatggcaggataaatccatagatacggatcagtttccaattatttggcaatccattagaaatgacacaaag cctttgaatcaccagaagctcaagaatgaatatgatttgctcatgaaaatgaagaatgatatgagtgttgaagatacatc tactgcgaggaaggaagaaaatgtacgaaagaacagaaatgcagatatattaccatcggagaaatatcgaccatacctga gctcctatacaaaagatggaacaaactacatcaacgctgtaatagtctcgtcttatgtttcaatgaaagcctacttcgtc acccaaacacctttgtctcacacgattactgacttttggagacttctggatgatcatgactcctactgcgtcatacactt cgtctcggaatcagacgacaaggtttacttttatcctagaagtgacttctccttggatacagaattacatttcatcaaaa gagattcagaaatagaacaccctcatggtattaggcaaatgaaattgaccatgagtgataagagttcgaatcattctaaa actttaaccttcctacgggttgaacttggaagagaaatgtttgtttctcctgcccagttgttcaaggcgatacaggtatt ggaagaattcagaagaaaacacgaagagagtcctgtaactgtggtgtcaaatgatggttcaattcattgtgatgtatttt gcactgtcgccaacactattgaatatatgaaaatcgacagcaaagtcgacatcttccagaccgtcaggctgctgctattc cgacgacccgagtttttcagagactttagaacaccatga |
|
Protein
| Protein ID | pfu_aug2.0_1590.1_01713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1590.1_01713.t1 MDLSNILESRKRLAGYSVSVSIGGNDTHYRKCYDYGTPDDLPDVTKVQIAECSTPLRGRYVIITQSREKSKTYPANYSRN AVLQLCDVEVFVDASQVATHKPAKQSSRFNNIFIASNAVDGSMGDKYMNNCSHTAGGKSTAWWRVNLEKLYLIQSIVIYP RPHNVTETQGRFAGFSLSVSDKENGSYHECFDYGKSGPIPDVTVRHVVNCFPPEEGQYVKIENERDNGPYATDYSKEAYV NLCEVEIIAQGIHDNKDDGDDEGGSSVAGPIIAVLVILLVILIIALILYKRRKKSDPKRDPLSGTLSAMTPIGSGANATA QMSGVKVANRWSNKSDEGKRHVSSNSLLTNDYMNEATYCNTARNLSGINVEDFKKYVSIKKEQKKFVEEFSGIPYGECHA ATIARLPGNMSKNRYKTTFPXPTGSTLADFWQMVWQENIEIIVMLTNLKEGTKKKCDKYWPEPNKGQGYGHLKLTLKDER TFSYYVLREMDMENTKLQAKRKILQFHYTTWPDHGTPDPFLLGQYEMLHEALIESFQWQDKSIDTDQFPIIWQSIRNDTK PLNHQKLKNEYDLLMKMKNDMSVEDTSTARKEENVRKNRNADILPSEKYRPYLSSYTKDGTNYINAVIVSSYVSMKAYFV TQTPLSHTITDFWRLLDDHDSYCVIHFVSESDDKVYFYPRSDFSLDTELHFIKRDSEIEHPHGIRQMKLTMSDKSSNHSK TLTFLRVELGREMFVSPAQLFKAIQVLEEFRRKHEESPVTVVSNDGSIHCDVFCTVANTIEYMKIDSKVDIFQTVRLLLF RRPEFFRDFRTP |
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