Gene
| Gene Model ID | pfu_aug2.0_16.1_20048 |
|---|---|
| Locus | scaffold16.1 : 58976 ... 72418 : + |
| To GenomeBrowser | scaffold16.1:58976..72418 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_50133.1_27251 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20048.t1 | 2 | 1 | Reeler | 31 | 157 | 4.8e-31 | 107.7 | 1.3e-34 | 4.8e-31 | 107.7 |
| pfu_aug2.0_16.1_20048.t1 | 2 | 2 | Reeler | 177 | 189 | 4.8e-31 | 107.7 | 3.9 | 14000.0 | -3.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20048.t1 | gi|676488742|ref|XP_009064713.1| | hypothetical protein LOTGIDRAFT_77223, partial [Lottia gigantea] | 1.0e-26 |
| pfu_aug2.0_16.1_20048.t1 | gi|512883568|ref|XP_002934190.2| | PREDICTED: putative ferric-chelate reductase 1 [Xenopus (Silurana) tropicalis] | 4.0e-24 |
| pfu_aug2.0_16.1_20048.t1 | gi|260819810|ref|XP_002605229.1| | hypothetical protein BRAFLDRAFT_126601 [Branchiostoma floridae] | 5.0e-24 |
| pfu_aug2.0_16.1_20048.t1 | gi|432873602|ref|XP_004072298.1| | PREDICTED: putative defense protein 3 [Oryzias latipes] | 4.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20048.t1 atgaagccttccagaacgttttatgtattatctattctcccatcattatttatgggaactgctggttatacttctggcgc ccccaccggagcatgtactggtatgacaccaggccattatcctaattcgcctcagtcctcacaggctccctacaccatca ctatcaatgccacgtcatacagtcctaatgatgtcatacgagtaacaatatcaggttcagggacgtcttttaagggtacc attattcaggcaaggaaaacaggatcgaccactcctactggccagttctcacttacctccggtgacactcaactaaagac tattacatgtcgtgcaaattcagatgctgttacacactccggttcagcgacaaaatcaaccaagacagtcttttggacag tgccttcagggttaacaggggaggtgaaattttatggaacatttgtacaatcatattcaacttactggttgaatatccag tctgctgcattaaacaaaagacctgatcctacaaccactacctcatctacaacaacaacaacaacaacaacaacaacaac aacaactaatgctcctacggcaccaccaacgtcaccagcttcgtcacttccttcgtcaccagcttcgtcactacctacgt cacctccttcttcaccacctacttcaccaccaacgtcagtaaatgctggatcgtcatcatctgcaccagcagggagcagt tcaatgatggattcaagttcgccaatgggtaccacactgggaggtccggctagtgacgctatgattgtatgttttaatat tttcacaataaaactctgttgccttttaatttttacactgaataaaatgttttaa |
|
Protein
| Protein ID | pfu_aug2.0_16.1_20048.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20048.t1 MKPSRTFYVLSILPSLFMGTAGYTSGAPTGACTGMTPGHYPNSPQSSQAPYTITINATSYSPNDVIRVTISGSGTSFKGT IIQARKTGSTTPTGQFSLTSGDTQLKTITCRANSDAVTHSGSATKSTKTVFWTVPSGLTGEVKFYGTFVQSYSTYWLNIQ SAALNKRPDPTTTTSSTTTTTTTTTTTTTNAPTAPPTSPASSLPSSPASSLPTSPPSSPPTSPPTSVNAGSSSSAPAGSS SMMDSSSPMGTTLGGPASDAMIVCFNIFTIKLCCLLIFTLNKMF |
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