Gene
| Gene Model ID | pfu_aug2.0_16.1_20053 |
|---|---|
| Locus | scaffold16.1 : 250203 ... 255790 : - |
| To GenomeBrowser | scaffold16.1:250203..255790 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_18648.1_61842 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20053.t1 | 5 | 1 | WD40 | 55 | 71 | 5.1e-15 | 54.6 | 9.5e-07 | 0.007 | 16.2 |
| pfu_aug2.0_16.1_20053.t1 | 5 | 2 | WD40 | 85 | 108 | 5.1e-15 | 54.6 | 6.7e-06 | 0.05 | 13.5 |
| pfu_aug2.0_16.1_20053.t1 | 5 | 3 | WD40 | 199 | 215 | 5.1e-15 | 54.6 | 1.1e-05 | 0.084 | 12.8 |
| pfu_aug2.0_16.1_20053.t1 | 5 | 4 | WD40 | 233 | 258 | 5.1e-15 | 54.6 | 0.0013 | 9.7 | 6.2 |
| pfu_aug2.0_16.1_20053.t1 | 5 | 5 | WD40 | 274 | 289 | 5.1e-15 | 54.6 | 0.0046 | 34.0 | 4.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20053.t1 | gi|524872908|ref|XP_005093209.1| | PREDICTED: F-box/WD repeat-containing protein 4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_16.1_20053.t1 | gi|676471114|ref|XP_009059074.1| | hypothetical protein LOTGIDRAFT_123420 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_16.1_20053.t1 | gi|241554591|ref|XP_002399519.1| | dactylin, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_16.1_20053.t1 | gi|733897515|ref|XP_010712927.1| | PREDICTED: F-box/WD repeat-containing protein 4 [Meleagris gallopavo] | 0.0 |
| pfu_aug2.0_16.1_20053.t1 | gi|543246978|ref|XP_005416475.1| | PREDICTED: F-box/WD repeat-containing protein 4 [Geospiza fortis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20053.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20053.t1 atgaacagacaacttccctggcttgtctatagtaaggaagagttgtggatttctgatctccactgcataaaatgctatca acaacaggggaacggtcatctccaagaaaagcctaaatgtctacgaggtttacaggacgacgtcagcaagtttgttgtca gggatagtaaagttgttagtggctgcagggacggcagtgtatttgtatgggatagttacaccggcagagttataacagag tttcaacagctacatcagtacgatgcgcaggctgtagatatacacgacaatgtattggtgtcaggatcaagggaccatac agttcagtgcatgcattcaaactttatagacaaaacaagcgttagatgggccttttcccatgctaatttttccattgaca tcgcgacgctctccataggatcattgttaaacttggcgacgtcacgcagaaagggacattttgcctgtggtactgcattt tgcttcagcagggctcccatcctcttgtttgaccttcaaaaagatacggccatcggttatttaggcgaggaccttaagta cggctcaggaatgttagatatgaagtacgaatcaccacacactctcctaacatgtggttacgacacttgtttacgattgt gggacactcggacaaatgaatgtgtaaagaagtgggaggaaccatttgacactgccatcgattgtgtacaatctgacgat gattttaccatgtttgccggcacatctcggcatggcatggtgcgagtttgggataaacggcaaactcagcctatacagat gtactacactggtcgtaagaggaacagtcccgtttattccatcgcattcaaccatgaaaaactattttgtgccttagaca tcggtgtacaagttcttgacttcaacacacaacataaaagattacactttagcggaacatga |
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Protein
| Protein ID | pfu_aug2.0_16.1_20053.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20053.t1 MNRQLPWLVYSKEELWISDLHCIKCYQQQGNGHLQEKPKCLRGLQDDVSKFVVRDSKVVSGCRDGSVFVWDSYTGRVITE FQQLHQYDAQAVDIHDNVLVSGSRDHTVQCMHSNFIDKTSVRWAFSHANFSIDIATLSIGSLLNLATSRRKGHFACGTAF CFSRAPILLFDLQKDTAIGYLGEDLKYGSGMLDMKYESPHTLLTCGYDTCLRLWDTRTNECVKKWEEPFDTAIDCVQSDD DFTMFAGTSRHGMVRVWDKRQTQPIQMYYTGRKRNSPVYSIAFNHEKLFCALDIGVQVLDFNTQHKRLHFSGT |
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