Gene
| Gene Model ID | pfu_aug2.0_16.1_20057 |
|---|---|
| Locus | scaffold16.1 : 397876 ... 421724 : + |
| To GenomeBrowser | scaffold16.1:397876..421724 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_53606.1_48800 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| succinyl- ligase | GO:0016405 GO:0016878 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20057.t1 | 1 | 1 | ATP-grasp_2 | 44 | 217 | 5.6e-38 | 130.3 | 2.20004e-41 | 1.1e-37 | 129.3 |
| pfu_aug2.0_16.1_20057.t1 | 2 | 1 | Ligase_CoA | 209 | 225 | 1.3e-06 | 28.1 | 1.6 | 7800.0 | -3.7 |
| pfu_aug2.0_16.1_20057.t1 | 2 | 2 | Ligase_CoA | 289 | 337 | 1.3e-06 | 28.1 | 6.3e-10 | 3.1e-06 | 26.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20057.t1 | gi|524909457|ref|XP_005109775.1| | PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_16.1_20057.t1 | gi|524909459|ref|XP_005109776.1| | PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_16.1_20057.t1 | gi|585171251|ref|XP_006737610.1| | PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Leptonychotes weddellii] | 0.0 |
| pfu_aug2.0_16.1_20057.t1 | gi|676438038|ref|XP_009048398.1| | hypothetical protein LOTGIDRAFT_200562 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_16.1_20057.t1 | gi|472359874|ref|XP_004399550.1| | PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Odobenus rosmarus divergens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20057.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20057.t1 atggctgccttgtttctgcgaggaagcagaagcatcgcaaacaaatacaattttcaagaagtatcaagggtactcggtaa ctgcggacagtgtttgccatgccagaacaaacaacaaagaagacacttgaacctccatgaataccgtagtttcggacttt taaaagacgcaggcgtaccagtgcctaaattcacagtctgtgatcatgtagatgagatatctaaagcagcacagaacctt aaactcttcagtgtgaaggtgacagcaaagtataatccaggtctgtccttaatccattttattagtgtggacgaagctgt tgccactgcggaaaaaatgataggctcaaaactgatcacaaaacaagcacccggcggtcgtgaatgtaaccaggtcatgc tgtccgagaggctgtactctaggagagaattctactttgccataatgatggaaagaaagtttgcaggacccgtaatggtg ggcagctctcagggaggtatgaatattgaggaggttgccatggagatgccagcagccatcttgaaggagccaatcgatgt tatatcgggattaaaacgggagcaagctatagccatggcggcagatatgggctttgatcctcagagcatagatcaggttc ggaatttggtacgggacagaaaaatcacgatcgttatcgcgttagacaggttgtcgctatatacagtgttttgcatggac tgtaaaatcaacattgatgacaatgcggcatttagacaaaaaggcatatttgaaatgaaagactggtcacaggaggatcc tagagaagaacaggctgctcaagccgaccttaattacattggactggacgggaacattggctgtttagtcaacggtgccg gccttgccatggcaacaatggacattatcaagttacatgggggaaatcccgctaacttcctggatgtaggaggtagtgct actgtcaaacaagtaacggaagcattcaggcttataacctcagacgaaaatgatgtgatcaagtttcacaaaaacgatat ttgtgatttggtctctcatcatatttgctggttttgttttgttcatccaggcagcaatgtggaggaagccaaggcccgtt tagctgttagtaaaagtcgatttactagtgaagctgatctaaatgatgctgcatcaaaggtaagtaaaatagctattact cgcatacaaaatcaggataaaataggaaccaaagcaaacaaagaaaaacctccaccacataaaaagaagcgaacattcaa tatgggagtgagaccaggtgcccaggatgttngttaccataccattttcatgacgtcacaatag |
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Protein
| Protein ID | pfu_aug2.0_16.1_20057.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20057.t1 MAALFLRGSRSIANKYNFQEVSRVLGNCGQCLPCQNKQQRRHLNLHEYRSFGLLKDAGVPVPKFTVCDHVDEISKAAQNL KLFSVKVTAKYNPGLSLIHFISVDEAVATAEKMIGSKLITKQAPGGRECNQVMLSERLYSRREFYFAIMMERKFAGPVMV GSSQGGMNIEEVAMEMPAAILKEPIDVISGLKREQAIAMAADMGFDPQSIDQVRNLVRDRKITIVIALDRLSLYTVFCMD CKINIDDNAAFRQKGIFEMKDWSQEDPREEQAAQADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGNPANFLDVGGSA TVKQVTEAFRLITSDENDVIKFHKNDICDLVSHHICWFCFVHPGSNVEEAKARLAVSKSRFTSEADLNDAASKVSKIAIT RIQNQDKIGTKANKEKPPPHKKKRTFNMGVRPGAQDVXYHTIFMTSQ |
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