Gene
| Gene Model ID | pfu_aug2.0_16.1_20059 |
|---|---|
| Locus | scaffold16.1 : 465815 ... 547432 : + |
| To GenomeBrowser | scaffold16.1:465815..547432 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_72427.1_56501 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear hormone receptor hr96-like | GO:0003677 GO:0006351 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20059.t1 | 1 | 1 | zf-C4 | 65 | 98 | 1.5e-10 | 41.1 | 5.3e-14 | 2.6e-10 | 40.3 |
| pfu_aug2.0_16.1_20059.t1 | 1 | 1 | Hormone_recep | 276 | 448 | 6.3e-15 | 54.8 | 2.0e-18 | 9.9e-15 | 54.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20059.t1 | gi|524864713|ref|XP_005089191.1| | PREDICTED: nuclear hormone receptor HR96-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_16.1_20059.t1 | gi|524864711|ref|XP_005089190.1| | PREDICTED: nuclear hormone receptor HR96-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_16.1_20059.t1 | gi|676468900|ref|XP_009058357.1| | hypothetical protein LOTGIDRAFT_122526, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_16.1_20059.t1 | gi|675889288|ref|XP_009030146.1| | hypothetical protein HELRODRAFT_70532 [Helobdella robusta] | 2.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20059.t1 atggagcaggtgcgtgatctgaaccagcattccatgaatgaacaatggggaggatacgattacggcagctcagcaggggc agaaccaatgtccggtagtgaggactatggcgagtattatggacgtggaacagacaataatcctaaaagagaacagaaaa ggcggccaaagcccaaggatggcacccagttgatatgtggggtgtgcggcgacaaggcactgggttataactttgacgcc atcacatgcgagtcttgtaaagcatttttcagaaggaatgccaataaaacaaaggtaagaaggttcatacacattttctg tcttccaaaaagcattgatcttcttggcgaagtagaaagcgaagaacagttggcgaaaaggcgacagaagggacccaaac ccaatggaccgaaacagcgccggttagacgatccaagggatgaaagcatggatatgccaatgagttcagccgaggctacg agctcaaatgacgtcatgagctccacggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtttctacgagtt accagtcggacgattcgactaggtcgcccgtggatagcttctcgtcgatgaagagcgaaacagaagaagatgatttccct cggccattgcgtgaagattaccggttagagatagagaatctagaacatcagtatgccgcagtgtttgacgtaccctacaa cgaagatcagttcactaaactagctaacaatcccagaacgcccaatgagctatttaatcttacggacatctttatacgaa gacttatcaagtttgccaagcacgtccctgaattcaaaaacctgcaacaggaggaccaaattcatttactcaagggtggc attatggaaatcatggtattacgctcagcgatgggatttgacagcaaaaatatggcatggaatgtcaaaggcgcttctca aaatactctgaaagaaatgaagctctctccagacatgatcaaagccgttgacagcggtatttacatggagcatgtgcgct ttgtcatgtccctgaatgaactgaccagagcaaataagactattctaacacttctgtttgtcatagagctgttttcctcg gatagaccaagtctcaaaaacaaggaattagtatcgaaaggacaagagaagttttcagcgtggctgaaagcgtaccttga gtctatttatcccctcagtgaagctagacaactgtatccaagattactcataaaattgcttgacgttcgtagtttgggag aatcgagtgcacagctagcatctcacctagatatcacgagacttgaaccgcttctggtcgaaatcttcagtttgcagaaa tga |
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Protein
| Protein ID | pfu_aug2.0_16.1_20059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20059.t1 MEQVRDLNQHSMNEQWGGYDYGSSAGAEPMSGSEDYGEYYGRGTDNNPKREQKRRPKPKDGTQLICGVCGDKALGYNFDA ITCESCKAFFRRNANKTKVRRFIHIFCLPKSIDLLGEVESEEQLAKRRQKGPKPNGPKQRRLDDPRDESMDMPMSSAEAT SSNDVMSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTSYQSDDSTRSPVDSFSSMKSETEEDDFP RPLREDYRLEIENLEHQYAAVFDVPYNEDQFTKLANNPRTPNELFNLTDIFIRRLIKFAKHVPEFKNLQQEDQIHLLKGG IMEIMVLRSAMGFDSKNMAWNVKGASQNTLKEMKLSPDMIKAVDSGIYMEHVRFVMSLNELTRANKTILTLLFVIELFSS DRPSLKNKELVSKGQEKFSAWLKAYLESIYPLSEARQLYPRLLIKLLDVRSLGESSAQLASHLDITRLEPLLVEIFSLQK |
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