Gene
| Gene Model ID | pfu_aug2.0_16.1_20060 |
|---|---|
| Locus | scaffold16.1 : 553811 ... 564995 : - |
| To GenomeBrowser | scaffold16.1:553811..564995 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_313152.1_43167 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| grpe protein homolog mitochondrial-like | GO:0005515 GO:0005739 GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20060.t1 | 3 | 1 | GrpE | 4 | 45 | 4.4e-08 | 32.8 | 0.015 | 36.0 | 3.8 |
| pfu_aug2.0_16.1_20060.t1 | 3 | 2 | GrpE | 115 | 142 | 4.4e-08 | 32.8 | 0.049 | 120.0 | 2.1 |
| pfu_aug2.0_16.1_20060.t1 | 3 | 3 | GrpE | 149 | 194 | 4.4e-08 | 32.8 | 1.8e-11 | 4.4e-08 | 32.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20060.t1 | gi|390335244|ref|XP_798953.3| | PREDICTED: grpE protein homolog 1, mitochondrial [Strongylocentrotus purpuratus] | 4.0e-11 |
| pfu_aug2.0_16.1_20060.t1 | gi|524866306|ref|XP_005089975.1| | PREDICTED: grpE protein homolog 1, mitochondrial-like [Aplysia californica] | 4.0e-09 |
| pfu_aug2.0_16.1_20060.t1 | gi|291228671|ref|XP_002734301.1| | PREDICTED: grpE protein homolog 1, mitochondrial-like [Saccoglossus kowalevskii] | 7.0e-09 |
| pfu_aug2.0_16.1_20060.t1 | gi|327270566|ref|XP_003220060.1| | PREDICTED: grpE protein homolog 1, mitochondrial [Anolis carolinensis] | 3.0e-08 |
| pfu_aug2.0_16.1_20060.t1 | gi|676446155|ref|XP_009050987.1| | hypothetical protein LOTGIDRAFT_114637, partial [Lottia gigantea] | 3.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20060.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20060.t1 atggaggtggagacagagattgaggagatgacagaggaggagaagacagaggagaagacagagatggagaagacagagat cgaggagaagacagagatcgaggagaagacagagatagaggaggaggaggtggtggtggtgatggcgacggtcacaggca tgtgtgtgaggtctgcgaacagtatctcaaaaaacttcgttagtgtgttgttaaacagaaattctcagatcagttcttca tcatgctcaaggctgagatattattctggtgcaacagagaccaacaacaaaaagtcagagagcgcaacgaaagaacaaca aggaacaacagagagtcctacagaagaacccaaggcagcatcagacgcggaagctaaactaaaggaagaaaaagacaaac tagaagctcaagtcaaagatttcaagaggtggccaatggttttggatataacatatgntgaagcattatttcaagttcct acccccgacaaagaaaaggactctcaggttgccgatatacagaaagttggatataaactacacgaacggacagttagacc agctctagtcggagttttcaaggcatag |
|
Protein
| Protein ID | pfu_aug2.0_16.1_20060.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20060.t1 MEVETEIEEMTEEEKTEEKTEMEKTEIEEKTEIEEKTEIEEEEVVVVMATVTGMCVRSANSISKNFVSVLLNRNSQISSS SCSRLRYYSGATETNNKKSESATKEQQGTTESPTEEPKAASDAEAKLKEEKDKLEAQVKDFKRWPMVLDITYXEALFQVP TPDKEKDSQVADIQKVGYKLHERTVRPALVGVFKA |
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