Gene
| Gene Model ID | pfu_aug2.0_16.1_20061 |
|---|---|
| Locus | scaffold16.1 : 578486 ... 590340 : + |
| To GenomeBrowser | scaffold16.1:578486..590340 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| excision repair cross-complementing rodent repair complementation group 8 | GO:0006289 GO:0009411 GO:0010165 GO:0016567 GO:0043234 GO:0044428 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20061.t1 | 4 | 1 | WD40 | 30 | 49 | 1.4e-22 | 78.6 | 0.42 | 3100.0 | -1.7 |
| pfu_aug2.0_16.1_20061.t1 | 4 | 2 | WD40 | 59 | 94 | 1.4e-22 | 78.6 | 4.8e-11 | 3.5e-07 | 29.8 |
| pfu_aug2.0_16.1_20061.t1 | 4 | 3 | WD40 | 121 | 152 | 1.4e-22 | 78.6 | 4.2e-08 | 0.00031 | 20.4 |
| pfu_aug2.0_16.1_20061.t1 | 4 | 4 | WD40 | 204 | 240 | 1.4e-22 | 78.6 | 4.7e-11 | 3.5e-07 | 29.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20061.t1 | gi|676463867|ref|XP_009056739.1| | hypothetical protein LOTGIDRAFT_233046 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_16.1_20061.t1 | gi|260832311|ref|XP_002611101.1| | hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_16.1_20061.t1 | gi|657571977|ref|XP_008289582.1| | PREDICTED: DNA excision repair protein ERCC-8 [Stegastes partitus] | 0.0 |
| pfu_aug2.0_16.1_20061.t1 | gi|568984704|ref|XP_006517826.1| | PREDICTED: DNA excision repair protein ERCC-8 isoform X1 [Mus musculus] | 0.0 |
| pfu_aug2.0_16.1_20061.t1 | gi|390334714|ref|XP_782753.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20061.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20061.t1 atggacatactacggacgttgcctggagtccccgtacctgtggatgaatatgagttcaaaggaatcatctatagtcacca catgtctgctatagcagtaaagcacagtctggtggctgtagggtgtcacagctcctctctacagcttgtagatctgaaaa gtggttccgcctcccacatgttgaaaggtcaccaaggatccatctttagtgtcaagtggtcaacaagggatgaattctta ctggcatctggaagtgctgataacagaattcttctctgggatatcagaagttctaaaggacccatgatgcatctggatca acataatggcttagaatcagataattattttgatggttgtacctctcatggtgggtatgttaatggactgtgcttcactc agaatggacttcatctactatcatatggcacagacaatagactacgactctggaacacaactacgggacaaaatacacta gtcaactacggcagaattagaaatgattcaaagaaatgtgtacaattcagtgtttttaatggcagcagaacaaatttcgt ttttgttccagaagcgagtaatattaaagtttttgatatgcataatggaaatcgacttagtatccttcgtggacactaca ctcaggttaattgttgtaagttacatagagattatcaggagttgtacagtggagggaatgattgtaacatacttatatgg actcctgaaacagacaaagcatatgatgatcacataaaggctcagaaaagagaacagccagcatcagggagatcagaaag aaatagttttgtgagaaggacaggggccactaatgacacgtggagcagtgatgaggaggaatcatga |
|
Protein
| Protein ID | pfu_aug2.0_16.1_20061.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20061.t1 MDILRTLPGVPVPVDEYEFKGIIYSHHMSAIAVKHSLVAVGCHSSSLQLVDLKSGSASHMLKGHQGSIFSVKWSTRDEFL LASGSADNRILLWDIRSSKGPMMHLDQHNGLESDNYFDGCTSHGGYVNGLCFTQNGLHLLSYGTDNRLRLWNTTTGQNTL VNYGRIRNDSKKCVQFSVFNGSRTNFVFVPEASNIKVFDMHNGNRLSILRGHYTQVNCCKLHRDYQELYSGGNDCNILIW TPETDKAYDDHIKAQKREQPASGRSERNSFVRRTGATNDTWSSDEEES |
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