Gene
| Gene Model ID | pfu_aug2.0_16.1_20064 |
|---|---|
| Locus | scaffold16.1 : 618466 ... 644322 : + |
| To GenomeBrowser | scaffold16.1:618466..644322 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_21101.1_18769 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dihydropyrimidine dehydrogenase | GO:0004152 GO:0005737 GO:0006207 GO:0006222 GO:0051536 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20064.t1 | 5 | 1 | Fer4_21 | 39 | 54 | 3.3e-13 | 49.2 | 7.3 | 4300.0 | -2.4 |
| pfu_aug2.0_16.1_20064.t1 | 1 | 1 | Fer4_20 | 57 | 166 | 5.7e-31 | 106.4 | 2.7e-33 | 1.6e-30 | 104.9 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 2 | Fer4_21 | 76 | 95 | 3.3e-13 | 49.2 | 7.9 | 4700.0 | -2.5 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 3 | Fer4_21 | 78 | 135 | 3.3e-13 | 49.2 | 4.2 | 2500.0 | -1.6 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 1 | Pyr_redox_2 | 190 | 486 | 1.4e-20 | 74.0 | 7.2e-11 | 4.3e-08 | 33.2 |
| pfu_aug2.0_16.1_20064.t1 | 4 | 1 | Pyr_redox | 190 | 220 | 3.9e-08 | 33.5 | 0.33 | 200.0 | 2.4 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 1 | NAD_binding_8 | 194 | 239 | 3.4e-14 | 52.6 | 4.5e-08 | 2.7e-05 | 24.1 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 1 | Pyr_redox_3 | 194 | 237 | 4.9e-07 | 30.0 | 0.088 | 52.0 | 3.8 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 2 | Pyr_redox_3 | 277 | 362 | 4.9e-07 | 30.0 | 0.0032 | 1.9 | 8.4 |
| pfu_aug2.0_16.1_20064.t1 | 4 | 2 | Pyr_redox | 335 | 379 | 3.9e-08 | 33.5 | 0.0016 | 0.96 | 9.8 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 1 | DHO_dh | 535 | 596 | 1.3e-39 | 135.9 | 0.00016 | 0.097 | 11.6 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 3 | Pyr_redox_3 | 685 | 719 | 4.9e-07 | 30.0 | 0.4 | 240.0 | 1.6 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 2 | Pyr_redox_2 | 687 | 983 | 1.4e-20 | 74.0 | 1.1e-10 | 6.4e-08 | 32.7 |
| pfu_aug2.0_16.1_20064.t1 | 4 | 3 | Pyr_redox | 687 | 722 | 3.9e-08 | 33.5 | 0.04 | 24.0 | 5.4 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 2 | NAD_binding_8 | 691 | 736 | 3.4e-14 | 52.6 | 1.4e-08 | 8.4e-06 | 25.7 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 4 | Pyr_redox_3 | 691 | 734 | 4.9e-07 | 30.0 | 0.17 | 98.0 | 2.9 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 5 | Pyr_redox_3 | 774 | 859 | 4.9e-07 | 30.0 | 0.0032 | 1.9 | 8.4 |
| pfu_aug2.0_16.1_20064.t1 | 4 | 4 | Pyr_redox | 832 | 876 | 3.9e-08 | 33.5 | 0.0016 | 0.96 | 9.8 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 2 | DHO_dh | 1032 | 1336 | 1.3e-39 | 135.9 | 3.4e-38 | 2.0e-35 | 122.1 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 1 | Dus | 1141 | 1207 | 7.7e-07 | 28.2 | 2.7e-08 | 1.6e-05 | 23.8 |
| pfu_aug2.0_16.1_20064.t1 | 2 | 2 | Dus | 1270 | 1313 | 7.7e-07 | 28.2 | 0.15 | 87.0 | 1.7 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 4 | Fer4_21 | 1310 | 1331 | 3.3e-13 | 49.2 | 2.3 | 1400.0 | -0.8 |
| pfu_aug2.0_16.1_20064.t1 | 5 | 5 | Fer4_21 | 1445 | 1486 | 3.3e-13 | 49.2 | 5.6e-16 | 3.3e-13 | 49.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20064.t1 | gi|676463861|ref|XP_009056737.1| | hypothetical protein LOTGIDRAFT_233044 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_16.1_20064.t1 | gi|291244574|ref|XP_002742170.1| | PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)]-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_16.1_20064.t1 | gi|260821394|ref|XP_002606018.1| | hypothetical protein BRAFLDRAFT_129513 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_16.1_20064.t1 | gi|156369958|ref|XP_001628240.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_16.1_20064.t1 | gi|701434434|ref|XP_010005074.1| | PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Chaetura pelagica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20064.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20064.t1 atggctgcaaaagtgctcagtagagacataccagatatcgagagtttactggctctcaatccaaaggtgcagaagcatgc aagtcttgtgtcaagttctgcaacaaaagaaaataaaaagcattggaagcgcaatgccccaaaaggatgctcaacttgta cgtccaaagagaagaattttgaggacataaaacacacaacattgagtgaaagaggggctttacgtgaagctgccagatgc ctaaagtgtgcagatgccccttgccaaaagagctgtccaactcagttggatatcaaatccttcatcacaagtatttcaaa caagaattactatggatcagctaaagccatcttgtcagacaatccgctgggtcttacatgtggcatggtatgtcctacgt ctgatctttgtgtgggaggttgtaacttgtatgcctcagaggaggggccaatcaacatcgggggattacaacaatttgct gtagagattttcaaatccatgagaatccctcagatccgagacccttcctcccctcccctggagtccctcccggagagtta ccaagctaaaatagcctttatagggtgtggtccagccagcatcagctgcgctaccttccttgcccgtctgggatatacaa atcttgctgtgtttgagaagcaggagtacattggaggtctcagctcctctgaaatcccacagtatcgtttgccatacagt gttgtggactttgaggtggagttgatgaaagatctaggggttaagatagagcatggtagagcactgagcagtaaagatct gaccgtgaacaaactcaaagagcagggatatgaagcagtgttcctgggaataggtttaccggatccaaagaagataccga tatttaaagaattaacagagagtcaaggatttttcacatcaaaagatttcctccccaaggtggctagtgccagcaaagca ggaatgtgtgcgtgtaaatcccagctgccccaggtacagggtaaggtgatcgtactgggggcaggtgatacagcgtttga ctgtgctacatccgccctgaggtgtggggcaaagagggtgtttgtcgtcttcaggaagggattcaccaacatcagagctg tgcctgaggagatggagctagccaaagaggagaaatgtgagtttttaccatttttggcccctagaaaggtgatgatgaaa aatggtaaggtaggagggatggagtttgtacgtacggagcaggacgatgatggtaactgggtagaggatgaggaggaaat cattaggataaaggctgattacatcatctccgcgtttggatccggactcactgaccaagatgtgttagatgccatggcac cagtgaaggtgaaccgttggggattaccagaggttgatagtacatccatgcagaccagtgaaccatgggtgttctgtggt ggcgatctggcaggcgtcgcccagaccactgtggaatcagtcaacgatggtaaacaggcttcatggttcatacacaagta tctacagtctctccatggtatccctattcccagtactccagcattacccaggttctttactcccatagacaacgtagaca tcagtgttgagatatgtggtctacgtttccccaatccctacggactagcaagtgccacgccaaccaccagtagcactatg atccgaagagcttttgaggaaggctggggcttcgctcttacaaagacattttctcttgacaaggacatagtgaccaatgt atccccacgtattgtaagggggacaacttctggtcagatttttggccctggtcaaggttccttcctgaacatagagctta tcagtgagaagacggcagcatactggtgtaagagtgtcacagaactcaaacaagatttccctgacaacattgtgattgcc agtatcatgtgtagctacagtaaggaagactggacagagctggcacagatggcggagattttcaaatccatgagaatccc tcagatccgagacccttcctcccctcccctacagtccctcccagagagttaccaagctaaaatagcctttatagggtgtg gtccagccagcatcagctgtgctaccttccttgcccgtctgggatatacaaaccttactgtgtttgagaagcaggagtac attggaggtctcagctcctctgaaatcccacagtatcgtctgccatacagtgttgtggactttgaggtggagttgatgaa agatctaggggttaagatagagcatggtagagcactgagcagtaaagatctgacggtgaacaaactcaaagagcagggat atgaagcagtgttcctgggaataggcttaccggatccaaagaagataccaatatttaaagaattaacagagagtcaagga tttttcacatcaaaagatttcctccccaaggtggccagtgccagcaaagcaggaatgtgtgcgtgtaaatcccagctgcc ccaagtacagggtaaggtgatcgtactgggggcaggtgatacagcgtttgactgtgctacatccgccctgaggtgtgggg caaagagggtgtttgtcgtcttcaggaagggattcaccaacatcagagccgtgcccgaggagatggagctagccaaagag gagaaatgtgagtttttaccatttttggcccctaggaaggtgatgatgaagaacggtaaggtaggagggatggagtttgt acgtacagagcaggatgatgatggtaactgggtagaagacgaagaggaaatcattaggataaaggctgattacatcatct ccgcgtttggatccggactcactgaccaagatgtgttagatgccatggtgccagtgaaggtgaatcgttggggattaccg gaggttgatagtacatccatgcagaccagtgaaccatgggtgttctgtggtggggatctggcaggcgtcgcccagaccac cgtggagtcggtcaacgacggtaaacaggcttcatggttcatacacaagtatctacagtctctccatggtatccctattc ccagtactccagcattacccaggttctttactcccatagacaacgtagacatcagtgtggagatatgtggtctacgtttc cctaacccctacggactagcaagtgccacgcccaccaccagtagcactatgatccgtagagcttttgaggaaggctgggg attcgctcttacaaagacattttctcttgacaaggacatagtgaccaatgtatccccacgtattgtaagggggacaactt ctggtcagatttttggccctggtcaaggttccttcctgaacatagagcttattagtgaaaagacggcagcatactggtgt aagagtgtcacagaactcaaacaagatttccctgacaatattgtgatagccagtatcatgtgtagctacagtaaggaaga ctggacagagctggcacagatggcggagaaagcaggtgctgatgctttagagttgaatctgtcatgtccacatgggatgg gggagagaggcatgggcttagcctgtggtcaggatgctgagttagtaagaaatatttgtcgctgggtgagacaggctgtg aagatcccattctttgccaaactgacacctaatgttaccagcattgtaacgatagctaaagcagcatatgagggtaatgc tgatggtgtgacagccacaaacactgtatctgggctgatgggactgaaatctaatggtacagcatggccaagtgtcggca aggaacaacgcacaacatacggaggtgtgtcaggcaatgctatcaggcctatagccctgagagcagtatcagccatagcc agggagctgcccggcttccctatattagctacaggaggtatcgactctgccgaggctggtctgcagtttttacaggcagg agcttcagcccttcaggtgtgtagtgcggtacagaaccaggatttcacccttatagatgattactgtaccggcttgaaga cccttctgtacctgagaagtatagatgagcttagagactgggacggtcagagccctccaacacagcagcaccagcttgga aaacctgttgttaagttggccaatgtcataggacagcacctgccatcgtttggaccttacttacagaagaggaaggagct tattgaggagcatttcaaggcagcagatctgcttggtgaagagttctctcctgataaagtcagaccacctgtctctccta agaaaccagtaccaaatgttaaggatgtgattggtcgagccttgtcaatgatcggtagctatggtgatctgaataataaa gaacaagtggtggcacttattgatgaagagatgtgtataaattgtggcaagtgttacatgacatgtaacgactctggtta ccaggctatcaggtttgatcctgagacccatcttcccactgtcacagatgattgtactgattaa |
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Protein
| Protein ID | pfu_aug2.0_16.1_20064.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20064.t1 MAAKVLSRDIPDIESLLALNPKVQKHASLVSSSATKENKKHWKRNAPKGCSTCTSKEKNFEDIKHTTLSERGALREAARC LKCADAPCQKSCPTQLDIKSFITSISNKNYYGSAKAILSDNPLGLTCGMVCPTSDLCVGGCNLYASEEGPINIGGLQQFA VEIFKSMRIPQIRDPSSPPLESLPESYQAKIAFIGCGPASISCATFLARLGYTNLAVFEKQEYIGGLSSSEIPQYRLPYS VVDFEVELMKDLGVKIEHGRALSSKDLTVNKLKEQGYEAVFLGIGLPDPKKIPIFKELTESQGFFTSKDFLPKVASASKA GMCACKSQLPQVQGKVIVLGAGDTAFDCATSALRCGAKRVFVVFRKGFTNIRAVPEEMELAKEEKCEFLPFLAPRKVMMK NGKVGGMEFVRTEQDDDGNWVEDEEEIIRIKADYIISAFGSGLTDQDVLDAMAPVKVNRWGLPEVDSTSMQTSEPWVFCG GDLAGVAQTTVESVNDGKQASWFIHKYLQSLHGIPIPSTPALPRFFTPIDNVDISVEICGLRFPNPYGLASATPTTSSTM IRRAFEEGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGQIFGPGQGSFLNIELISEKTAAYWCKSVTELKQDFPDNIVIA SIMCSYSKEDWTELAQMAEIFKSMRIPQIRDPSSPPLQSLPESYQAKIAFIGCGPASISCATFLARLGYTNLTVFEKQEY IGGLSSSEIPQYRLPYSVVDFEVELMKDLGVKIEHGRALSSKDLTVNKLKEQGYEAVFLGIGLPDPKKIPIFKELTESQG FFTSKDFLPKVASASKAGMCACKSQLPQVQGKVIVLGAGDTAFDCATSALRCGAKRVFVVFRKGFTNIRAVPEEMELAKE EKCEFLPFLAPRKVMMKNGKVGGMEFVRTEQDDDGNWVEDEEEIIRIKADYIISAFGSGLTDQDVLDAMVPVKVNRWGLP EVDSTSMQTSEPWVFCGGDLAGVAQTTVESVNDGKQASWFIHKYLQSLHGIPIPSTPALPRFFTPIDNVDISVEICGLRF PNPYGLASATPTTSSTMIRRAFEEGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGQIFGPGQGSFLNIELISEKTAAYWC KSVTELKQDFPDNIVIASIMCSYSKEDWTELAQMAEKAGADALELNLSCPHGMGERGMGLACGQDAELVRNICRWVRQAV KIPFFAKLTPNVTSIVTIAKAAYEGNADGVTATNTVSGLMGLKSNGTAWPSVGKEQRTTYGGVSGNAIRPIALRAVSAIA RELPGFPILATGGIDSAEAGLQFLQAGASALQVCSAVQNQDFTLIDDYCTGLKTLLYLRSIDELRDWDGQSPPTQQHQLG KPVVKLANVIGQHLPSFGPYLQKRKELIEEHFKAADLLGEEFSPDKVRPPVSPKKPVPNVKDVIGRALSMIGSYGDLNNK EQVVALIDEEMCINCGKCYMTCNDSGYQAIRFDPETHLPTVTDDCTD |
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