Gene
| Gene Model ID | pfu_aug2.0_16.1_20068 |
|---|---|
| Locus | scaffold16.1 : 752345 ... 753409 : + |
| To GenomeBrowser | scaffold16.1:752345..753409 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug1.0_5979.1_31099 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_16.1_20068.t1 | 3 | 1 | RRM_1 | 2 | 62 | 0.0 | 174.5 | 8.5e-21 | 2.1e-17 | 62.5 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 1 | RRM_6 | 2 | 62 | 3.3e-34 | 116.6 | 4.6e-13 | 1.1e-09 | 38.0 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 1 | RRM_5 | 8 | 66 | 3.6e-32 | 109.9 | 2.5e-14 | 6.1e-11 | 41.9 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 2 | RRM_6 | 74 | 140 | 3.3e-34 | 116.6 | 1.3e-10 | 3.3e-07 | 30.1 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 2 | RRM_1 | 75 | 140 | 0.0 | 174.5 | 4.2e-17 | 1.0e-13 | 50.6 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 2 | RRM_5 | 88 | 148 | 3.6e-32 | 109.9 | 4.0e-11 | 1.0e-07 | 31.7 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 3 | RRM_1 | 187 | 257 | 0.0 | 174.5 | 9.6e-20 | 2.4e-16 | 59.1 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 3 | RRM_6 | 187 | 257 | 3.3e-34 | 116.6 | 2.5e-15 | 6.2e-12 | 45.3 |
| pfu_aug2.0_16.1_20068.t1 | 3 | 3 | RRM_5 | 201 | 261 | 3.6e-32 | 109.9 | 1.2e-11 | 2.9e-08 | 33.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_16.1_20068.t1 | gi|657734713|ref|XP_008308815.1| | PREDICTED: ELAV-like protein 1 isoform X2 [Cynoglossus semilaevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_16.1_20068.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20068.t1 atgtcagatgcacaacttgaaacccttttcttggagattggaacaatcaaatcatgtcgtattattagagataagaggac aaaatacagctatgggtttgggtttgtagagtaccataacgaagaagatgctacaaaggcaatcacctcccttgatggat tgaatctggaaaacaagaggattaaggttgcttatagcggaaatactaggaaaggtattttggctattgaaaaccttcca acagattatggggaggaggaacttcggaatcagtttcagcaatatggagagatcgtaaatactaaagtaatgcgatctaa aggaagtgacgtgtccaacgggagagggattgtcacctttcagaagatatctgacactgaaaaagctaagacagatttga aaggaaaaattctctctggtggagtaaagccgttggagatcagaatgaagaatactttggggaaaatgacttattttgca agtaaattgaagtataattccgagggaggtttcagcattgataacgataacacaaagcaggatcagaaagtttatacttt atttgtctacaacattggtagacaggtagacgcaactatattatggcaaatgtttgcaccattaggaaaggtaaaacgcg cacttgttgtttatgacaaggaaactgggttatccaaaaattacggatttgtaaaaatggaaaactatagtgatgcttgc aatgcaattaaccatatgaatggaggcactctcgatggaaaggagctgaaagtggatttcagtagaaaccaaaaccagag tgaggaagaaaatctccaatga |
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Protein
| Protein ID | pfu_aug2.0_16.1_20068.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_16.1_20068.t1 MSDAQLETLFLEIGTIKSCRIIRDKRTKYSYGFGFVEYHNEEDATKAITSLDGLNLENKRIKVAYSGNTRKGILAIENLP TDYGEEELRNQFQQYGEIVNTKVMRSKGSDVSNGRGIVTFQKISDTEKAKTDLKGKILSGGVKPLEIRMKNTLGKMTYFA SKLKYNSEGGFSIDNDNTKQDQKVYTLFVYNIGRQVDATILWQMFAPLGKVKRALVVYDKETGLSKNYGFVKMENYSDAC NAINHMNGGTLDGKELKVDFSRNQNQSEEENLQ |
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