Gene
| Gene Model ID | pfu_aug2.0_1608.1_28406 |
|---|---|
| Locus | scaffold1608.1 : 24222 ... 86125 : - |
| To GenomeBrowser | scaffold1608.1:24222..86125 |
| Genes list of scaffold | scaffold1608.1 |
| Synonym | pfu_aug1.0_1719.1_44114 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1608.1_28406.t1 | 3 | 1 | Homeobox | 134 | 163 | 1.2e-20 | 72.8 | 0.3 | 1100.0 | -0.7 |
| pfu_aug2.0_1608.1_28406.t1 | 2 | 1 | CUT | 465 | 538 | 0.0 | 172.8 | 1.8e-27 | 6.9e-24 | 83.4 |
| pfu_aug2.0_1608.1_28406.t1 | 2 | 2 | CUT | 932 | 1010 | 0.0 | 172.8 | 2.5e-28 | 9.4e-25 | 86.2 |
| pfu_aug2.0_1608.1_28406.t1 | 3 | 2 | Homeobox | 1038 | 1075 | 1.2e-20 | 72.8 | 5.1e-09 | 1.9e-05 | 24.1 |
| pfu_aug2.0_1608.1_28406.t1 | 2 | 1 | Homeobox_KN | 1058 | 1077 | 4.3e-09 | 35.9 | 0.0012 | 4.3 | 7.1 |
| pfu_aug2.0_1608.1_28406.t1 | 3 | 3 | Homeobox | 1094 | 1150 | 1.2e-20 | 72.8 | 4.7e-19 | 1.7e-15 | 56.3 |
| pfu_aug2.0_1608.1_28406.t1 | 2 | 2 | Homeobox_KN | 1114 | 1147 | 4.3e-09 | 35.9 | 2.0e-09 | 7.3e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1608.1_28406.t1 | gi|524961037|ref|XP_005080453.1| | PREDICTED: homeobox protein cut-like 1 isoform X9 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_1608.1_28406.t1 | gi|634823133|ref|XP_007938305.1| | PREDICTED: protein CASP isoform X5 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_1608.1_28406.t1 | gi|525017992|ref|XP_005056541.1| | PREDICTED: homeobox protein cut-like 1 isoform X11 [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_1608.1_28406.t1 | gi|532000236|ref|XP_005344645.1| | PREDICTED: homeobox protein cut-like 1 isoform X9 [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_1608.1_28406.t1 | gi|321400114|ref|NP_001189474.1| | protein CASP isoform f [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1608.1_28406.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1608.1_28406.t1 atgcagccctttacaactttcttaatgccgatgtctacgattttctgggacagccctcagagaaaactggacacgactac cactaagagagaactggacacgactgccactgagctagccaacagacaagacgagagcgaggcttcccggaaacgactcg tagagcagagcagagaattcaaaaagaatacaccggaagatttacgtagagtggtcgcaccacttttaaagagtttccag tccgaagttgattccctgtcaaaaagaagtaaagcagcggaaggggcgttcctgacagtctacaaacagatcattgatct acctgaggtgaccatcaaacagttacgtgatagattgaaagagtgtgacgaccgcgccgaagctacagcagaggctagaa cacgggagaaagagcgagaactccagcgagagtttgcagagaaggagcgacagttacaggaaacccaacttgctgtggcc aagaaactaggagaagctgagcacaaagtgacggccttacaggcagaattaggaaatgtgcagtcagaagtttttgaagt taaggccaagtacgacgaggtcacttcggcaaagatggcgaaattagtaaatgatgcgaaaatatgcgaaatttacgatt caaaatctgataatttagatgatatgagagttgaagcatcagagagggagatagaagaactccggcgacagttgctaatc gccactcagcaccaggtgtcatcagaaaccgtacaacaagccccggacatggataaagcaatagacatgttcaaacgatc tagtctggaagtagaattggctgctaaagaaaaagagatatcacagctcgtggaggacgtgcagagattacaggcctcnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnngctcaacaagctcagagagtcaacctcgagtcagatttattattatgtctttcgaaatcga aagtaaaataaatagtgccataatgtgtaaagagagctccactcccgcattgtcggaaaacacagaagcgtttgcctcga ttctcggagaagaaatcgtgtcatcgtaccgtcagtctcgcatttcaaccccatccactccatcaacgaatggcgataag aaagaaacggaaaatggagaaagaactctaccgtcaaaagtgtcgcctaaaatagaacgtgttcccagcattccgagtga gagtcctcatttacccccaccaccctcccctcagtttttccagtacggcactggacacttactttcaaactatatgggga tgggagtcatcaagtcggagcagcagacttgtaattctcaaggaatcgatacgtcgcttgtggccaaaacagtgcgagaa cttcttagcattcataatataggacagcgattgtttgcaaagcacgttctaggcctttcacaaggaacagttagtgaact attgtcaaagccaaaatcctgggataaactaacggaaaaagggagagaatcctataggaaaatgtacgcctgggcgacag atgaaagaaacattctggctttgaaagccatatctccaaagaaagggcccacaactctggtatccagcgttcagcgagag gacgcacagacagaggagagaatcgctcaaattctaaacgaggcccagatggccatgcagatgaagaaggcaatggaaca agcttacccgcaaactgttgcacacgcctatcagaaagaaatgatgagattggctcaagtatctgtatatcaggggctgc cgtcccctcacagctcatctaattcggtaacttctcctaccggtccaggcagcatactctccgagcggaaaccttcagtc ctggaaaacagccggcgacgggagagtgtcgatagtcagggatcggcaaaggaaatggtagagaggatctacaagcagga actaatgaagctggcacaagctgcggagagtgccggtaatatagcggcaagcacgatgtaccagcaggagttagctcgac tggcacagaatgtacagagggaagtgttcacagagccaggggaaatacgccggccaagaaactcacctgaggacatgaga ataaagacggagccacgagatagtagctatgacgacaccatgatgcagtcaaacggtccgatagatctcagtaaacatag cagcagttccacgccctccacccccacctcacccccagagtcagatcaatcaccctcacatcatcaggctagtgccttct ttcaagtcaagccaaaaatgaacggtcatacgacacctgtagagagtaaagcctttgttccacagtttgggcagcagacg gaatgtgtttctcctatgttacgcaccatataccgtcataacgtcataatccccaatcccaaactaaccccatcatataa ttttgctcctgtatctaaaaaaaagaatggaaaaattatttttgacgccactctcctttccttgctagtgtcaccttcct ctgaaaagccacctccatctgccactcatggtatccatggcaaccgagtgtccatttccagttctgctccgcctgagtcc accacacctatccgccaccatgcgccaccctctctccaccacccacaccatcatcacaaccaccaccactttccacatcc cgcccaccacttcaaccacaatccttttagctgggcttccttctcctacccttcctccatgcttgaagtggttgccatga catcagagattgacacattagaattgacctcaagggtcaaggacgttctacaattccataatttaggacagaagttgttc ggagaggcggttttgggactttctcagggttccgtcagtgagttattgtccaagcctaagccttggcacatgcttagcat caagggtcgggaaccgttcatcaagatgcacctgtggcttagtgatccacataacgtagatagacttaaacattatcaga acgaagtcaaagctcagcggcgtagacgtagtagcttggaagaaaggtcctacgactccccgtcactgccaaaaaggccg agggtattctttaccgaggaacagaaagagaagctccgaatggcttacagtcacgatccctaccctaatcagaatacgat agaagctctagccaatgaattaaaccgacgtagacgaagtagcttggaagaaaggtcctacgactccccgtcactgccaa aaaggccgagggtattctttaccgaggaacagaaagagaagctccgaatggcttacagtcacgatccctaccctaatcag aatacgatagaagctctagccaatgaattaaacgtaggggttaaaacggtcattaactggtttcacaatcaccgcatgag agcgaaacagcaacaacactccggcagcgggtcagtgtcaagtatgggagaatatggcagccaaataaaatctgaaaata acgacgataattcggatcagagcgatatttcaagcttatccggggatactggaccttaccagtctagtttccatggcaac gaagccagtcaatggttgtttccaaaatttgagccaatttcggcactgaagcgtagttccccactagggggcctggaaaa tgatgacggagaggacaatgatgatggagtggtagaggacgatgatagccgttctagtagaagtaacagtccgagtccca tgggacttgacgatgaaagccggcaggaaatcagagcaaaaatagacggagataaagttttcaatgatttcggagaaact tctccagtagaggatggtgaggacttaacagcatcacatctgatgcagaacatgactcaggggtccggagtcaataaacg gaaaaggtcaaatccgcagtacgtttccgaaggcaggcagctggacaaaacaaaaactatactggatggcttaccaagtc aggtgtccagagacgaaggtgttagcttagagttagatgaagatgtagagaaggaaaacgagagtgggaatattgaccaa ggatatttaagtcgagatcacgtcaacaagatggcgaaactgtcccattctgtggactccacggaagacgactgggacga gtttgatagaaaaagcagcatagagaaactacagaaaaacctacagcaaacagctgttggtggatctcttgtaacgcctt tatttgtgttcaaaagctacgcagttcatagtgcagaagtaagctttaaacctttagcactgatattaaatcctaataaa tcagctttaaacattcaacactga |
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Protein
| Protein ID | pfu_aug2.0_1608.1_28406.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1608.1_28406.t1 MQPFTTFLMPMSTIFWDSPQRKLDTTTTKRELDTTATELANRQDESEASRKRLVEQSREFKKNTPEDLRRVVAPLLKSFQ SEVDSLSKRSKAAEGAFLTVYKQIIDLPEVTIKQLRDRLKECDDRAEATAEARTREKERELQREFAEKERQLQETQLAVA KKLGEAEHKVTALQAELGNVQSEVFEVKAKYDEVTSAKMAKLVNDAKICEIYDSKSDNLDDMRVEASEREIEELRRQLLI ATQHQVSSETVQQAPDMDKAIDMFKRSSLEVELAAKEKEISQLVEDVQRLQAXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXSTSSESQPRVRFIIMSFEIESKINSAIMCKESSTPALSENTEAFASILGEEIVSSYRQSRISTPSTPSTNGDK KETENGERTLPSKVSPKIERVPSIPSESPHLPPPPSPQFFQYGTGHLLSNYMGMGVIKSEQQTCNSQGIDTSLVAKTVRE LLSIHNIGQRLFAKHVLGLSQGTVSELLSKPKSWDKLTEKGRESYRKMYAWATDERNILALKAISPKKGPTTLVSSVQRE DAQTEERIAQILNEAQMAMQMKKAMEQAYPQTVAHAYQKEMMRLAQVSVYQGLPSPHSSSNSVTSPTGPGSILSERKPSV LENSRRRESVDSQGSAKEMVERIYKQELMKLAQAAESAGNIAASTMYQQELARLAQNVQREVFTEPGEIRRPRNSPEDMR IKTEPRDSSYDDTMMQSNGPIDLSKHSSSSTPSTPTSPPESDQSPSHHQASAFFQVKPKMNGHTTPVESKAFVPQFGQQT ECVSPMLRTIYRHNVIIPNPKLTPSYNFAPVSKKKNGKIIFDATLLSLLVSPSSEKPPPSATHGIHGNRVSISSSAPPES TTPIRHHAPPSLHHPHHHHNHHHFPHPAHHFNHNPFSWASFSYPSSMLEVVAMTSEIDTLELTSRVKDVLQFHNLGQKLF GEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIKMHLWLSDPHNVDRLKHYQNEVKAQRRRRSSLEERSYDSPSLPKRP RVFFTEEQKEKLRMAYSHDPYPNQNTIEALANELNRRRRSSLEERSYDSPSLPKRPRVFFTEEQKEKLRMAYSHDPYPNQ NTIEALANELNVGVKTVINWFHNHRMRAKQQQHSGSGSVSSMGEYGSQIKSENNDDNSDQSDISSLSGDTGPYQSSFHGN EASQWLFPKFEPISALKRSSPLGGLENDDGEDNDDGVVEDDDSRSSRSNSPSPMGLDDESRQEIRAKIDGDKVFNDFGET SPVEDGEDLTASHLMQNMTQGSGVNKRKRSNPQYVSEGRQLDKTKTILDGLPSQVSRDEGVSLELDEDVEKENESGNIDQ GYLSRDHVNKMAKLSHSVDSTEDDWDEFDRKSSIEKLQKNLQQTAVGGSLVTPLFVFKSYAVHSAEVSFKPLALILNPNK SALNIQH |
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