Gene
| Gene Model ID | pfu_aug2.0_1616.1_21710 |
|---|---|
| Locus | scaffold1616.1 : 24736 ... 29759 : + |
| To GenomeBrowser | scaffold1616.1:24736..29759 |
| Genes list of scaffold | scaffold1616.1 |
| Synonym | pfu_aug1.0_7973.1_31498 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1616.1_21710.t1 | 1 | 1 | adh_short | 49 | 188 | 1.4e-22 | 80.3 | 1.1e-25 | 2.0e-22 | 79.9 |
| pfu_aug2.0_1616.1_21710.t1 | 1 | 1 | KR | 50 | 144 | 5.7e-10 | 39.1 | 4.1e-13 | 7.6e-10 | 38.7 |
| pfu_aug2.0_1616.1_21710.t1 | 1 | 1 | adh_short_C2 | 58 | 139 | 3.8e-09 | 36.6 | 2.8e-12 | 5.2e-09 | 36.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1616.1_21710.t1 | gi|556957100|ref|XP_005989699.1| | PREDICTED: retinol dehydrogenase 13-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1616.1_21710.t1 | gi|573908202|ref|XP_006641820.1| | PREDICTED: retinol dehydrogenase 13-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1616.1_21710.t1 | gi|657582265|ref|XP_008295185.1| | PREDICTED: retinol dehydrogenase 13-like [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1616.1_21710.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21710.t1 atgaataaaataccaactttggcctgttctcggtctatcaagattattgaggtcaaatatccgaagcttgtcgttatcag tcttaaagttataagacgatacttcgatggaggtgtgtgtcggagtaaggccaggcttgccggtaaaaccgtcatcataa caggaggtaataccggtatcggcaaagaaacagcaagggacctagccgaaaggggtgctaaagtgatactagcttgtcgg gatgtcaaaaaaggacagtctgctgtggaggacattcaggatacgacaaacagcaagattgtctccgtaaaaactttaga tttagcttccttaaaatctgtgagaaagttcgcagacgacatcctgaaaactgagaagaaaatcgacattttgatcaaca atgcaggtgttatgatgtgtccatacatgaagacggaggacgggtttgagatgcagtttggtacaaatcacctgggtcac ttcctgctgaccaacctcctactggacaggattaaggaatccgcccccgccaggatcgttaatgtgtcctccctcggtca cacacggactggtgtcacggccaattcactgcaccccggagcagttcagaccgagttgagtcgtcattttagtcgcttgc tccacatattgatgaccccaattttctggttgatgataaaaaatcctactcaaggagctcagacgtccatatattgtgcc gtatcagaaaatctggaaaacgtttccggaaagtatttcagcgattgcgcaatcaaagaagagagtaaaccggctcaaag tgacgaatctgccaaaaaattatgggaagtttctgaaacactggttggactcaaatga |
|
Protein
| Protein ID | pfu_aug2.0_1616.1_21710.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21710.t1 MNKIPTLACSRSIKIIEVKYPKLVVISLKVIRRYFDGGVCRSKARLAGKTVIITGGNTGIGKETARDLAERGAKVILACR DVKKGQSAVEDIQDTTNSKIVSVKTLDLASLKSVRKFADDILKTEKKIDILINNAGVMMCPYMKTEDGFEMQFGTNHLGH FLLTNLLLDRIKESAPARIVNVSSLGHTRTGVTANSLHPGAVQTELSRHFSRLLHILMTPIFWLMIKNPTQGAQTSIYCA VSENLENVSGKYFSDCAIKEESKPAQSDESAKKLWEVSETLVGLK |
|