Gene
| Gene Model ID | pfu_aug2.0_1616.1_21711 |
|---|---|
| Locus | scaffold1616.1 : 29806 ... 48442 : + |
| To GenomeBrowser | scaffold1616.1:29806..48442 |
| Genes list of scaffold | scaffold1616.1 |
| Synonym | pfu_aug1.0_5859.1_45312 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinol dehydrogenase 13-like | GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1616.1_21711.t1 | 2 | 1 | adh_short | 100 | 242 | 1.90016e-42 | 145.0 | 8.0e-23 | 1.1e-19 | 70.9 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 1 | KR | 101 | 211 | 9.6e-19 | 67.7 | 6.5e-11 | 8.8e-08 | 32.0 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 1 | Epimerase | 102 | 278 | 1.3e-12 | 47.6 | 1.6e-07 | 0.00021 | 20.8 |
| pfu_aug2.0_1616.1_21711.t1 | 3 | 1 | NAD_binding_10 | 102 | 141 | 1.0e-06 | 28.9 | 2.2e-06 | 0.003 | 17.5 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 1 | adh_short_C2 | 109 | 220 | 1.3e-14 | 54.6 | 5.5e-10 | 7.5e-07 | 29.1 |
| pfu_aug2.0_1616.1_21711.t1 | 3 | 2 | NAD_binding_10 | 217 | 235 | 1.0e-06 | 28.9 | 2.3 | 3100.0 | -2.1 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 2 | adh_short | 384 | 527 | 1.90016e-42 | 145.0 | 4.0e-23 | 5.3e-20 | 71.9 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 2 | KR | 385 | 523 | 9.6e-19 | 67.7 | 2.1e-11 | 2.8e-08 | 33.6 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 2 | Epimerase | 386 | 554 | 1.3e-12 | 47.6 | 9.1e-09 | 1.2e-05 | 24.8 |
| pfu_aug2.0_1616.1_21711.t1 | 3 | 3 | NAD_binding_10 | 386 | 431 | 1.0e-06 | 28.9 | 0.00024 | 0.33 | 10.9 |
| pfu_aug2.0_1616.1_21711.t1 | 2 | 2 | adh_short_C2 | 393 | 474 | 1.3e-14 | 54.6 | 4.6e-08 | 6.3e-05 | 22.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1616.1_21711.t1 | gi|291231890|ref|XP_002735885.1| | PREDICTED: retinol dehydrogenase 13-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1616.1_21711.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21711.t1 atggctgccattcatgattgtgtctttaatttgattgaatatccgccttattcaccttatcttgctccatcagactttcc tctattcccgaaactgaaagcagctatttctggcacccactttcagtccgatgatgacgtcatacttgcagtggatggct ttttgaaagtcaagataaggagttctttaaaagtggtattgaggtccataaacaccggtggcaaaatgctcagcctaaaa ctgctacgacgcttttttgtcggaggtgtgtgtctcagtgaagctagacttgacggcaaaaccgtcatcataacgggagc gaataccggtatcggtaaagagacggcaacggaccttgctggaaggggtgctcgtgttattcttgcatgtcgaaatccga agaaggcaaatggagcggcagagaaaattcgagcttcaaccggaaatccaaatgtaatcgtaatgatgctagatttagct tcattgaaatccgtcagggaattttccaaagaagtcttgaaaaatgaacctaaaatccatattttgatcaacaatgcagc tgtgggtgcttgccctctaactaagacagaggacgggtttgagatgcagtttggtacaaatcaccttggtcacttcctgc tgaccaacctcctactggacaggattaaggaatctgcccccgccaggatcgtcgtcgtatcagcaaaggcacatttttat tcatctggcttagattttgacaacctgagtgccgagaaaagctataattccattctggcttacatgaacagcaaattagc taacattttatttaccagagagctcagtagaagattacagggcacaggtgtaacaatcaattctctacatccgggtgtta tcccgacggaacttgtccgccattttggaagatggttgcccatactacaaatgatattatttccaatatttagaatggcc atgaaaaccagggcccaaggagctcagacgaccatttattgtgccgtgtctgaagaagtaaacggtgtttccggaaagta tttcagacgtgcatgtttactaacatttgtgccacttgttgtcatcttatacctcataagaaaaattgccgatggagggt cgtgtcgcagcaaggtcagacttgacggtaagaccgtcattataacaggagcaaataccggtgtcggcaaagaaacggca agggacatggctggtaggggtgcacgagtaatcatagcctgtcgtgacgtcaagaagggtaactctgcagctgatgacgt caaagcatcaacaaaaaacaatgatgtcatcgtgaaaaagttggatttggcgtcactgaaatcagtcagggagtttgcta aggatgtcctgaaatcggagtcaaaaatcaacattttgattaacaatgcaggtattatgatgtgtccatacatgaagacg gaggatgggtttgagatgcagtttggtacgaatcacctgggtcacttcctgctgactaacctcctactggataggatcaa ggaatctgccccttccaggatcgttaatgtgtcttcgatggcgcacatgtattcatcgattgatttcgagaatttgaatg cagagaagggttacaatccttacactgcctaccagaaaagcaagttatccaatgtcctgttttctcgagaactcagtagg agactggagggaacgggtgtgacgacatattcccttcatccgggggctgttcgaacagaacttcagcgccatttcagtag ctggatccattttatcttacatccagccgtaacgttgatgtttaagagtcccatgcagggtgctcagacatccatttact gtgctgtgtctgaggacctgaacaatgtgtctgggaaatacttcagtgattgtgcgatcaaaggagagagcaagcaggcg aaggatgacggaacagccaagaaattgtgggaagtatccgaaaaacttgtgggcctaaagtga |
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Protein
| Protein ID | pfu_aug2.0_1616.1_21711.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21711.t1 MAAIHDCVFNLIEYPPYSPYLAPSDFPLFPKLKAAISGTHFQSDDDVILAVDGFLKVKIRSSLKVVLRSINTGGKMLSLK LLRRFFVGGVCLSEARLDGKTVIITGANTGIGKETATDLAGRGARVILACRNPKKANGAAEKIRASTGNPNVIVMMLDLA SLKSVREFSKEVLKNEPKIHILINNAAVGACPLTKTEDGFEMQFGTNHLGHFLLTNLLLDRIKESAPARIVVVSAKAHFY SSGLDFDNLSAEKSYNSILAYMNSKLANILFTRELSRRLQGTGVTINSLHPGVIPTELVRHFGRWLPILQMILFPIFRMA MKTRAQGAQTTIYCAVSEEVNGVSGKYFRRACLLTFVPLVVILYLIRKIADGGSCRSKVRLDGKTVIITGANTGVGKETA RDMAGRGARVIIACRDVKKGNSAADDVKASTKNNDVIVKKLDLASLKSVREFAKDVLKSESKINILINNAGIMMCPYMKT EDGFEMQFGTNHLGHFLLTNLLLDRIKESAPSRIVNVSSMAHMYSSIDFENLNAEKGYNPYTAYQKSKLSNVLFSRELSR RLEGTGVTTYSLHPGAVRTELQRHFSSWIHFILHPAVTLMFKSPMQGAQTSIYCAVSEDLNNVSGKYFSDCAIKGESKQA KDDGTAKKLWEVSEKLVGLK |
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