Gene
| Gene Model ID | pfu_aug2.0_1616.1_21712 |
|---|---|
| Locus | scaffold1616.1 : 53872 ... 60715 : - |
| To GenomeBrowser | scaffold1616.1:53872..60715 |
| Genes list of scaffold | scaffold1616.1 |
| Synonym | pfu_aug1.0_2756.1_23069 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinol dehydrogenase 12 | GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1616.1_21712.t1 | 1 | 1 | adh_short | 4 | 147 | 1.6e-21 | 76.9 | 1.0e-24 | 2.5e-21 | 76.3 |
| pfu_aug2.0_1616.1_21712.t1 | 1 | 1 | KR | 5 | 151 | 1.9e-09 | 37.4 | 1.1e-12 | 2.6e-09 | 36.9 |
| pfu_aug2.0_1616.1_21712.t1 | 1 | 1 | Epimerase | 6 | 182 | 1.0e-05 | 25.0 | 5.6e-09 | 1.4e-05 | 24.6 |
| pfu_aug2.0_1616.1_21712.t1 | 2 | 1 | adh_short_C2 | 12 | 91 | 5.1e-07 | 29.7 | 4.9e-10 | 1.2e-06 | 28.4 |
| pfu_aug2.0_1616.1_21712.t1 | 2 | 2 | adh_short_C2 | 175 | 207 | 5.1e-07 | 29.7 | 1.6 | 4000.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1616.1_21712.t1 | gi|742165423|ref|XP_010884226.1| | PREDICTED: retinol dehydrogenase 12-like isoform X1 [Esox lucius] | 0.0 |
| pfu_aug2.0_1616.1_21712.t1 | gi|742165429|ref|XP_010884228.1| | PREDICTED: retinol dehydrogenase 12-like isoform X2 [Esox lucius] | 0.0 |
| pfu_aug2.0_1616.1_21712.t1 | gi|573893592|ref|XP_006634548.1| | PREDICTED: retinol dehydrogenase 12-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1616.1_21712.t1 | gi|637333949|ref|XP_008115183.1| | PREDICTED: retinol dehydrogenase 12-like [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1616.1_21712.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21712.t1 atggatggaaagacggtcatcgtcactggatccaacactggaatcggcaaggaaacggtcagggatctggctaaaagagg agcaagaattatcatggcttgtagagacatgaagaggaccgaacccgcggcagaggaactacggactgacaccggaaata aaaacatcgtggtgcgcaaactcgatcttgcgtcgctaaaatcagtacgaagttttgcagaggaaattctcaaaacggag tcaagaattgatatactgataaataatgcaggtgtgatgtactgtccatactcaaaaactgccgatggattcgagatgca gtttggcaccaatcacctgggtccgttcctgttaaccaatctcttgctagatagaatcaaagactccgctcctgcaagga ttgtcaacgtgtcatcgattggtcattcacttgcaaatccacttgatcttgaaaatctgaacagtgagaaaggatacgat ccgtacgaagcatatcatcgcagcaaactactcaacattctcttcaccagggaacttagcagacgactcaaaggttctgg agtgactgctaattctcttcaccctggctttgtgaatacagatctacctcgacatttcaacaagttcctgaattttgtaa tgcaacctttcatgtggttaagtttgaaagattctcgcgcaggcgcacaaacgtcaatttattgcgcagtggccgaggaa ctggttggtgtgagtgggaagtactttagcgactgcgcagtgaaggaggaagtaaaacaagcacgagacgaccaactagc caaacgactgtgggaaatgtcagaggaaaaggtggctaaggcaaaatag |
|
Protein
| Protein ID | pfu_aug2.0_1616.1_21712.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21712.t1 MDGKTVIVTGSNTGIGKETVRDLAKRGARIIMACRDMKRTEPAAEELRTDTGNKNIVVRKLDLASLKSVRSFAEEILKTE SRIDILINNAGVMYCPYSKTADGFEMQFGTNHLGPFLLTNLLLDRIKDSAPARIVNVSSIGHSLANPLDLENLNSEKGYD PYEAYHRSKLLNILFTRELSRRLKGSGVTANSLHPGFVNTDLPRHFNKFLNFVMQPFMWLSLKDSRAGAQTSIYCAVAEE LVGVSGKYFSDCAVKEEVKQARDDQLAKRLWEMSEEKVAKAK |
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