Gene
| Gene Model ID | pfu_aug2.0_1616.1_21715 |
|---|---|
| Locus | scaffold1616.1 : 87817 ... 116595 : - |
| To GenomeBrowser | scaffold1616.1:87817..116595 |
| Genes list of scaffold | scaffold1616.1 |
| Synonym | pfu_aug1.0_31292.1_62646 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| c-1-tetrahydrofolate cytoplasmic | GO:0004329 GO:0004488 GO:0005524 GO:0009396 GO:0043227 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1616.1_21715.t1 | 2 | 1 | THF_DHG_CYH | 42 | 70 | 1.5e-12 | 47.5 | 0.00074 | 2.7 | 8.0 |
| pfu_aug2.0_1616.1_21715.t1 | 2 | 2 | THF_DHG_CYH | 69 | 114 | 1.5e-12 | 47.5 | 2.7e-13 | 1.0e-09 | 38.4 |
| pfu_aug2.0_1616.1_21715.t1 | 2 | 1 | THF_DHG_CYH_C | 117 | 283 | 0.0 | 227.8 | 0.0 | 0.0 | 227.8 |
| pfu_aug2.0_1616.1_21715.t1 | 1 | 1 | FTHFS | 306 | 875 | 0.0 | 734.7 | 0.0 | 0.0 | 733.8 |
| pfu_aug2.0_1616.1_21715.t1 | 2 | 2 | THF_DHG_CYH_C | 364 | 385 | 0.0 | 227.8 | 1.4 | 5100.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1616.1_21715.t1 | gi|291234171|ref|XP_002737032.1| | PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1616.1_21715.t1 | gi|507530458|ref|XP_004649313.1| | PREDICTED: C-1-tetrahydrofolate synthase, cytoplasmic [Jaculus jaculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1616.1_21715.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21715.t1 atggaaaagaagtttcagaatttttcccgcgttcggaagggtaaatggtttcctcatgatgtattgaaagttcccggatg cttcgtatatgaagtcacaatggaaaatatcgccaaaataatggatataaggaatgaaattaagaagaacgttgagactt accaacagaagtatccaggattctgtccggggcttgccattgttcaggtactcaaggcagtggaaaaactcaatgcagat agcacggtacatggcattattgttcagcttcccatggagtcagtgaataccatagatgcacacctcgtcacaaattcaat actaccatcaaaagatgtggatgggttacatcagtccaatgcgggtaagctggcacgaggagaccttgatgatgtcatgt tgccctgtacacctagaggttgtctggaacttattaaaaggacaggggagagcattcatggaaagacagctgtcgtatta ggtcgtagtaagatcgtcgggtcacccatggctgaccttttgacctggaatcatgccaccgttacccgatgtcactccaa aacacagaacattcaagatgtggttaagtcagcagacatattggtagtggctattggtaaaacacagtttgtgaagggag actggataaaaccaggatcagtggttattgattgtggaataaactctattccagatgcaacaaagaagagcggcaagagg ctggtaggggacgtagactttgactcagctaaggatgtggcggggtggatcacgcccgtaccaggaggggtgggaccaat gactgtagccatgttactgcagaatacgtttgagcaagccagacgagagatggaaagactgggtggtactgggaagtgga gtctggagttaatgccccttgcactcaaaactcctgtaccaagtgatttggaggtagcccagtctcaagttcccaagaac attgatttgttggcaagagagatccatcttttaccagaggaggtggatttatacggcaaaaagaaagcaaaagtttccct cggcgtgctggatagacttaaacatcagaaaaatggcaaatacattgtcgtcacagggataactccgaccccactcggcg agggtaagagcacgaccaccatcggactggcccaggcgttaggatcgcagctcaaaaagaacgtgtttgcttgtgtgaga cagccttctcaaggaccaacgtttggaatcaaaggaggggcggcagggggaggctactcccaagtcatacccatggagga attcaacctccacctcacaggagatatccatgccataacggctgctaacaacctgctggcggctcagatcgacgcgagga tgttccacgaagctacacagaaagacgaggatctttacaggaggctggtaccagacattaagggaaagaggaacttctca aagatacaactaggcagacttaagagggtaggcattacaaaaactgttcctagcgagcttaccccagaggaggtgacgaa gtttgttcgtctagatatagaccccgacactgtcacttggcagatggataaaaggataggcattacaaagactgtcccca gcgagctcacgccagaggaggtgacgaagtttgtacgtctagatatagaccccgacactgtcacttggcagagggttgtt gatactaacgacagattcctcagaaagatcactgtaggtcagggtccactagagaaaggcaaaactagacagtgtcaatt tgacatcacagtggccagcgagatcatggctattctagcattgaccactggtctgagagacatgagagagaggctaggga aaatggtgattgggagtagtagagctggggtacccatcactgcagatgacttgggagtgagtggagcattagcagtactg atgaaggatgctattcgacctaatcttatgcagaccctcgagggcactccagtatttgtacacgctgggccttttgctaa cattgctcatggtaactcctctatcatagctgataagataggattaaaactggtgggagaagacggattcgtagtgacag aggcaggtttcggtgcagacataggaatggagaaattcttcaacatcaagtgccgatattcagagcttattccaaatgct gtagttctggtagccactgtccgagccttaaagatgcacggtgtacccttacccaaggagtatgtcgaggagaacttaga gttattggagaagggatgctcaaacttgaggaagcagatagaaaatgccaacaagtttggcgtgcctgtggtggtagcca ttaattcttttgtcactgacacaccagctgaagtagcattagtacagaagtttgcccgcaccaacggagctttcgatgcc gtcatctgtagccactgggcgaagggcggggccggggctgccgatttagctgcagcagtagataaagcaacacagcaacc taccaacttcaaattcctctatgacgtcaagttaccaatagaagagaagattgccacaattgccaaggaaatctatggag cagatggtatagatgttttaccagaggcccaagaacagatcagccggtacacaaaacagaaatgcagatacacgaaacag gttgaatctacgagagacaagaggcacaagcaggcctctattgcttaccaaacagatgtacggagcagacggtattga |
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Protein
| Protein ID | pfu_aug2.0_1616.1_21715.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21715.t1 MEKKFQNFSRVRKGKWFPHDVLKVPGCFVYEVTMENIAKIMDIRNEIKKNVETYQQKYPGFCPGLAIVQVLKAVEKLNAD STVHGIIVQLPMESVNTIDAHLVTNSILPSKDVDGLHQSNAGKLARGDLDDVMLPCTPRGCLELIKRTGESIHGKTAVVL GRSKIVGSPMADLLTWNHATVTRCHSKTQNIQDVVKSADILVVAIGKTQFVKGDWIKPGSVVIDCGINSIPDATKKSGKR LVGDVDFDSAKDVAGWITPVPGGVGPMTVAMLLQNTFEQARREMERLGGTGKWSLELMPLALKTPVPSDLEVAQSQVPKN IDLLAREIHLLPEEVDLYGKKKAKVSLGVLDRLKHQKNGKYIVVTGITPTPLGEGKSTTTIGLAQALGSQLKKNVFACVR QPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAQIDARMFHEATQKDEDLYRRLVPDIKGKRNFS KIQLGRLKRVGITKTVPSELTPEEVTKFVRLDIDPDTVTWQMDKRIGITKTVPSELTPEEVTKFVRLDIDPDTVTWQRVV DTNDRFLRKITVGQGPLEKGKTRQCQFDITVASEIMAILALTTGLRDMRERLGKMVIGSSRAGVPITADDLGVSGALAVL MKDAIRPNLMQTLEGTPVFVHAGPFANIAHGNSSIIADKIGLKLVGEDGFVVTEAGFGADIGMEKFFNIKCRYSELIPNA VVLVATVRALKMHGVPLPKEYVEENLELLEKGCSNLRKQIENANKFGVPVVVAINSFVTDTPAEVALVQKFARTNGAFDA VICSHWAKGGAGAADLAAAVDKATQQPTNFKFLYDVKLPIEEKIATIAKEIYGADGIDVLPEAQEQISRYTKQKCRYTKQ VESTRDKRHKQASIAYQTDVRSRRY |
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