Gene
| Gene Model ID | pfu_aug2.0_1616.1_21717 |
|---|---|
| Locus | scaffold1616.1 : 136146 ... 144278 : - |
| To GenomeBrowser | scaffold1616.1:136146..144278 |
| Genes list of scaffold | scaffold1616.1 |
| Synonym | pfu_aug1.0_28946.1_26446 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1616.1_21717.t1 | 1 | 1 | Telomere_Sde2 | 25 | 99 | 4.9e-29 | 101.1 | 3.9e-32 | 1.2e-28 | 99.8 |
| pfu_aug2.0_1616.1_21717.t1 | 2 | 1 | Telomere_Sde2_2 | 150 | 169 | 9.8e-27 | 92.0 | 1.4 | 4200.0 | -3.0 |
| pfu_aug2.0_1616.1_21717.t1 | 2 | 2 | Telomere_Sde2_2 | 313 | 372 | 9.8e-27 | 92.0 | 7.3e-30 | 2.2e-26 | 90.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1616.1_21717.t1 | gi|706150940|ref|XP_010206801.1| | PREDICTED: protein SDE2 homolog, partial [Colius striatus] | 0.0 |
| pfu_aug2.0_1616.1_21717.t1 | gi|701356083|ref|XP_009960706.1| | PREDICTED: protein SDE2 homolog, partial [Tyto alba] | 0.0 |
| pfu_aug2.0_1616.1_21717.t1 | gi|690425977|ref|XP_009331970.1| | PREDICTED: protein SDE2 homolog [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_1616.1_21717.t1 | gi|701375311|ref|XP_009987312.1| | PREDICTED: protein SDE2 homolog, partial [Tauraco erythrolophus] | 0.0 |
| pfu_aug2.0_1616.1_21717.t1 | gi|686614081|ref|XP_009283855.1| | PREDICTED: protein SDE2 homolog [Aptenodytes forsteri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1616.1_21717.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21717.t1 gaagatgatttttacatcacctgtaatggtcgacgagttggcagtggtcagactatacaagatggcaaaatttaccacat cgtaccgagacttccagggggaaaaggaggttttggatcgatgcttcgtgccatcggagctcagattgacaagacaaaca atagagaggcatgtcgggacctcagtggtaggaggatgagagatgttaacaatgaaaaacaaatgaaagaatggctatct aagcaatcacaaagagagaaggagaaggaagaaagaaggagagagagatgggagcgacgtaaagccatgccgaatcacaa gtttgatgatcccttgtatgaccaacagagggcgcaagtatttgaaaacttagaggacgctgttcaaaaaggtttgtcca aatctcaagctgcatcaagcactgcgangcgtcagatacttactgtcttaaatacattgggcatggacttccgaataaaa gttgaaaaaggtgacaatggtgtaaaatccaaaattgacaatgttgagacccagagtgatgctaaagtcttgcccttccg aataaaagtcgaaaatggggaaaatagtgtaaaatctgagatggacaatattgaaacgcagaatgatgctaaagcgttga cctttcgaataaaagttgaaaatggggagaacagaggtgtaaaatccaaaatggaggatgaaacacagaatcatgctgaa gacccgtctgtccgaataaaagtcgaaaattgtgaggacaatgtaaaatctggaattaacaaaattgaaacgcagaatga tactaaagatttaacaaatactggaggaaacgatgctgcaaaggaaaatccaaacacgaaagatatttccgagcattcag agccttctgatattaaagatagcagagaagctaatactgagcgagaattagggccagtagatcttgaccaatgtaactcg gcagatgatttgatcgctttcggtctcgataaattgaaggaagaattaatggcacggcagctgaaatgtggaggaacttt acaggagcgtgctcagagactattttccgttaaaggactgacgcgggatcaaattgatcctacactgtttgcaaaaccta caaaaggaaagaagaaaaagtga |
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Protein
| Protein ID | pfu_aug2.0_1616.1_21717.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1616.1_21717.t1 EDDFYITCNGRRVGSGQTIQDGKIYHIVPRLPGGKGGFGSMLRAIGAQIDKTNNREACRDLSGRRMRDVNNEKQMKEWLS KQSQREKEKEERRRERWERRKAMPNHKFDDPLYDQQRAQVFENLEDAVQKGLSKSQAASSTAXRQILTVLNTLGMDFRIK VEKGDNGVKSKIDNVETQSDAKVLPFRIKVENGENSVKSEMDNIETQNDAKALTFRIKVENGENRGVKSKMEDETQNHAE DPSVRIKVENCEDNVKSGINKIETQNDTKDLTNTGGNDAAKENPNTKDISEHSEPSDIKDSREANTERELGPVDLDQCNS ADDLIAFGLDKLKEELMARQLKCGGTLQERAQRLFSVKGLTRDQIDPTLFAKPTKGKKKK |
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