Gene
| Gene Model ID | pfu_aug2.0_162.1_07065 |
|---|---|
| Locus | scaffold162.1 : 24712 ... 26025 : - |
| To GenomeBrowser | scaffold162.1:24712..26025 |
| Genes list of scaffold | scaffold162.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-6 isoform x1 | GO:0005230 GO:0005488 GO:0014059 GO:0016021 GO:0034220 GO:0044459 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_162.1_07065.t1 | 1 | 1 | Neur_chan_LBD | 4 | 185 | 1.8e-36 | 125.3 | 4.9e-40 | 2.4e-36 | 124.9 |
| pfu_aug2.0_162.1_07065.t1 | 2 | 1 | Neur_chan_memb | 193 | 275 | 3.9e-13 | 49.8 | 1.5e-14 | 7.3e-11 | 42.4 |
| pfu_aug2.0_162.1_07065.t1 | 2 | 2 | Neur_chan_memb | 317 | 355 | 3.9e-13 | 49.8 | 0.00012 | 0.58 | 9.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_162.1_07065.t1 | gi|589963814|ref|XP_006994452.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6 isoform X1 [Peromyscus maniculatus bairdii] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_162.1_07065.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_162.1_07065.t1 atgtcagattacaatcacccgattttacttgacgttagtttatattttcttggaatcaatgagattgatgagctggagga aaaattagttacgacagggtatttgtctattttttggcaggacttccgtctatcatgggacgaaactctgtacaatgaca tccacataatatattatccccaggatgaagtttggaaaccagatattgtgttatataatggattcaaaaggtttcagcaa ctgggtggaagtttctacaacgtagagctatggagcgatggacaagttcaatggatgccatttgaggtatttgagagccg ttgctcactggacacaacttattacccctttgacaaacaaacatgcagcattgtttttgtcatttggagttttaccgctg gggaggttatgatttcgagaagctatgagggtctggtgtatgacgaagaatttcaagaaaacaacgtttgggaaattact aacacatcgtacagtgttttcatgagcaccagagaatctagaataacgttcgagctacaactgcggaggaagcccctgtt ttatgtcatcagcttcattactccagtgttgattctgggtttgttgaactgtctagtctttgcaataccttcagagagtg gagagaaaacaggctattctgtgactatctttctctcattggcagtattcttatcaattatcaccagcgtaatcccgaca aattcagaaacaacatcaattctaggaatcttccttctacttcaagtcatcattgggtccttagtcctacttatcacatc gcttcaactgagattatgtcagcgtggtgacagacctgtctatggatgttacaaaacatttgctagatttcacagaggat tcagaggatgttgttgtcgtttgagaatgaagaataggatcgatgcagaagtacgcgatttggatgagaaattccaagat gagaaggaagatatctacaactggagtaatgttgtctcagggatagactatatctgtttctggacatatcttctcgtata cagcacaatgactatattaatgtttagtttgatgctgaattcatattatgagtag |
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Protein
| Protein ID | pfu_aug2.0_162.1_07065.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_162.1_07065.t1 MSDYNHPILLDVSLYFLGINEIDELEEKLVTTGYLSIFWQDFRLSWDETLYNDIHIIYYPQDEVWKPDIVLYNGFKRFQQ LGGSFYNVELWSDGQVQWMPFEVFESRCSLDTTYYPFDKQTCSIVFVIWSFTAGEVMISRSYEGLVYDEEFQENNVWEIT NTSYSVFMSTRESRITFELQLRRKPLFYVISFITPVLILGLLNCLVFAIPSESGEKTGYSVTIFLSLAVFLSIITSVIPT NSETTSILGIFLLLQVIIGSLVLLITSLQLRLCQRGDRPVYGCYKTFARFHRGFRGCCCRLRMKNRIDAEVRDLDEKFQD EKEDIYNWSNVVSGIDYICFWTYLLVYSTMTILMFSLMLNSYYE |
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