Gene
| Gene Model ID | pfu_aug2.0_1626.1_21720 |
|---|---|
| Locus | scaffold1626.1 : 70184 ... 72331 : - |
| To GenomeBrowser | scaffold1626.1:70184..72331 |
| Genes list of scaffold | scaffold1626.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ap-4 complex subunit sigma-1 | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1626.1_21720.t1 | 1 | 1 | Clat_adaptor_s | 3 | 91 | 2.7e-21 | 75.7 | 3.9e-25 | 2.9e-21 | 75.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1626.1_21720.t1 | gi|677057475|gb|KFP23980.1| | AP-4 complex subunit sigma-1, partial [Colius striatus] | 1.0e-25 |
| pfu_aug2.0_1626.1_21720.t1 | gi|348527458|ref|XP_003451236.1| | PREDICTED: AP-4 complex subunit sigma-1-like isoformX2 [Oreochromis niloticus] | 4.0e-25 |
| pfu_aug2.0_1626.1_21720.t1 | gi|410898736|ref|XP_003962853.1| | 5.0e-25 | |
| pfu_aug2.0_1626.1_21720.t1 | gi|554861872|ref|XP_005941035.1| | PREDICTED: AP-4 complex subunit sigma-1-like isoform X3 [Haplochromis burtoni] | 8.0e-25 |
| pfu_aug2.0_1626.1_21720.t1 | gi|51468086|ref|NP_001003826.1| | AP-4 complex subunit sigma-1 [Danio rerio] | 2.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_1626.1_21720.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1626.1_21720.t1 gagggactgatagagacagaagatgatgttgtggtatacagagtgtttgccaacctgatcttcatcctggctatcacaga agatgagaatgagcttgcagccttggagttccttctaaactttgtggagacaatgcagaaatattttgagaaaattctgc tgtttaacatggatcgagtccacatgattttagacgagatgatatctaatggaagtgtatcagagaccaatagaaacagg attcttgtgccgttaaatttgatggatgcagcgaaaaaatga |
|
Protein
| Protein ID | pfu_aug2.0_1626.1_21720.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1626.1_21720.t1 EGLIETEDDVVVYRVFANLIFILAITEDENELAALEFLLNFVETMQKYFEKILLFNMDRVHMILDEMISNGSVSETNRNR ILVPLNLMDAAKK |
|