Gene
| Gene Model ID | pfu_aug2.0_1629.1_31807 |
|---|---|
| Locus | scaffold1629.1 : 128956 ... 135776 : + |
| To GenomeBrowser | scaffold1629.1:128956..135776 |
| Genes list of scaffold | scaffold1629.1 |
| Synonym | pfu_aug1.0_4988.1_67121 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1629.1_31807.t1 | 4 | 1 | zf-C2H2_4 | 99 | 121 | 2.4e-08 | 33.7 | 2.1e-05 | 0.031 | 14.5 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 1 | zf-C2H2 | 100 | 121 | 3.3e-06 | 27.0 | 3.7e-05 | 0.056 | 13.8 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 2 | zf-C2H2_4 | 127 | 152 | 2.4e-08 | 33.7 | 0.00012 | 0.17 | 12.2 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 2 | zf-C2H2 | 127 | 152 | 3.3e-06 | 27.0 | 0.0077 | 11.0 | 6.5 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 3 | zf-C2H2_4 | 177 | 200 | 2.4e-08 | 33.7 | 0.0059 | 8.8 | 6.9 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 3 | zf-C2H2 | 177 | 200 | 3.3e-06 | 27.0 | 0.0022 | 3.3 | 8.2 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 4 | zf-C2H2_4 | 206 | 229 | 2.4e-08 | 33.7 | 0.00031 | 0.46 | 10.9 |
| pfu_aug2.0_1629.1_31807.t1 | 4 | 4 | zf-C2H2 | 206 | 229 | 3.3e-06 | 27.0 | 0.00013 | 0.19 | 12.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1629.1_31807.t1 | gi|676425559|ref|XP_009044354.1| | hypothetical protein LOTGIDRAFT_109370, partial [Lottia gigantea] | 4.0e-29 |
| pfu_aug2.0_1629.1_31807.t1 | gi|664767691|ref|XP_008541361.1| | PREDICTED: zinc finger and SCAN domain-containing protein 12 isoform X2 [Equus przewalskii] | 1.0e-12 |
| pfu_aug2.0_1629.1_31807.t1 | gi|545197531|ref|XP_005603712.1| | PREDICTED: LOW QUALITY PROTEIN: zinc finger and SCAN domain-containing protein 12 [Equus caballus] | 1.0e-12 |
| pfu_aug2.0_1629.1_31807.t1 | gi|664767688|ref|XP_008541360.1| | PREDICTED: zinc finger and SCAN domain-containing protein 12 isoform X1 [Equus przewalskii] | 1.0e-12 |
| pfu_aug2.0_1629.1_31807.t1 | gi|594661911|ref|XP_007179166.1| | PREDICTED: zinc finger and SCAN domain-containing protein 12 [Balaenoptera acutorostrata scammoni] | 1.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_1629.1_31807.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1629.1_31807.t1 atgtccataacaatagacagagtgagttatgtcatctgtgtcctgcaaagtttaagagcaagtcaagtctacgacatcac atacttgagatccatgataagaaactggatgttcaatgtgaaatatgtggtcagaaattttctagaaagaatttactcaa taggcacatggtatctcatggtgttgacaagtcgagatggctggaatgttcagaatgtggaaaaggattttggttcccgt tcaaccttaaacgacacatgccaaactgtccatggacctcaaggagacaaacagcattgctcgtattgtggaagaggttt cagttcaaaagcaggaatggtcagtcatgttcaacaagtgcacttcaatatgtttccatttcattgcccagtagaggagt gtaaagcaggatttggccgtaagaaagctgttgatgaacatatgaaacaagtgcacccaaatgttgattatgtatctctt aagactaccagaaagagatacaagtactggaaatctacagaggaattattctattgttctcactgtagcagcagcttctg ttataaggcaaagttagtggagcatatgcataatgctcatagcgacgcatttccttataaatgtgacatttgtaaccagg gtttcttggagtattcgttccttatgtaccaccaaaagaaggcacacaacaaagatattggttccatggatacaaatggt gatgtcaataagtcatctagcaatcaggttccagaccctgttaaagacacgtcaggaaatgattctttcagggaaaagtt gaaggcgttattagagggaaatgacttgaccacaggaaatgctgagagtaaagctaatggcgtgtctacaacagaggaaa atgaggagattacttcctctcaggatgtaccaaacaatgatggcagtcaggtacttatacagaacaacacagttgaactt gtagagcccttagattctgaggatctcccagagggcagcacggtacattatataatagaagacgttggagatggaactgt cttaataaaggagttgattaaccagtcctga |
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Protein
| Protein ID | pfu_aug2.0_1629.1_31807.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1629.1_31807.t1 MSITIDRVSYVICVLQSLRASQVYDITYLRSMIRNWMFNVKYVVRNFLERIYSIGTWYLMVLTSRDGWNVQNVEKDFGSR STLNDTCQTVHGPQGDKQHCSYCGRGFSSKAGMVSHVQQVHFNMFPFHCPVEECKAGFGRKKAVDEHMKQVHPNVDYVSL KTTRKRYKYWKSTEELFYCSHCSSSFCYKAKLVEHMHNAHSDAFPYKCDICNQGFLEYSFLMYHQKKAHNKDIGSMDTNG DVNKSSSNQVPDPVKDTSGNDSFREKLKALLEGNDLTTGNAESKANGVSTTEENEEITSSQDVPNNDGSQVLIQNNTVEL VEPLDSEDLPEGSTVHYIIEDVGDGTVLIKELINQS |
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