Gene
| Gene Model ID | pfu_aug2.0_1634.1_15159 |
|---|---|
| Locus | scaffold1634.1 : 94 ... 6635 : - |
| To GenomeBrowser | scaffold1634.1:94..6635 |
| Genes list of scaffold | scaffold1634.1 |
| Synonym | pfu_aug1.0_9933.1_68120 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| presenilin 1-1 | GO:0000139 GO:0002376 GO:0004190 GO:0005789 GO:0006508 GO:0007219 GO:0009966 GO:0016021 GO:0035556 GO:0042981 GO:0043232 GO:0044237 GO:0048513 GO:0048518 GO:0048523 GO:0065009 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1634.1_15159.t1 | 2 | 1 | Presenilin | 61 | 82 | 4.49957e-42 | 144.2 | 0.25 | 460.0 | -0.7 |
| pfu_aug2.0_1634.1_15159.t1 | 2 | 2 | Presenilin | 98 | 213 | 4.49957e-42 | 144.2 | 2.8026e-45 | 4.49957e-42 | 144.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1634.1_15159.t1 | gi|676433820|ref|XP_009047025.1| | hypothetical protein LOTGIDRAFT_138705 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1634.1_15159.t1 | gi|46981378|gb|AAT07667.1| | presenilin 1-2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1634.1_15159.t1 | gi|325197134|ref|NP_001191418.1| | presenilin 1-1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1634.1_15159.t1 | gi|471370847|ref|XP_004375934.1| | PREDICTED: presenilin-2 isoform X2 [Trichechus manatus latirostris] | 0.0 |
| pfu_aug2.0_1634.1_15159.t1 | gi|471370845|ref|XP_004375933.1| | PREDICTED: presenilin-2 isoform X1 [Trichechus manatus latirostris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1634.1_15159.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1634.1_15159.t1 atgagtctgacacttgacgtagatttgaatgctgattcagactcggaacttgattctgaaacatcaccactcatgaatgc cacagcagccccacttgatccatctcggaaccgcttgtacggagaacctgtacccgctcagcgacgtagtggtatacggg aagaattgtaccaaggtgctgaaacacagacagattctgaaaggaacatacagaacaatagcaatgatgcaaacagagaa tcacgtagtagtactacacggaggcgtcgtggacaaagcgggacagaggaggaagacgacaccctgctatatggtgccaa acatgttattatgctgtttgtacctgtaactctttgtatggctgttgtagtggcaactatcagttctgtggctttctaca ctaaaaaaggaggatacttgatctatacaccgtttcatgatgctgacaaggctgatgcagacacaggaactaagatttgg cagtcagtggccaatgcgggtattttgttgggggtcatctgtgtcatgaccattctgctcctggttctctacaagtatag atgctacaaagttatacatggctggttgataatctcatctttgatgttacttttccttttctcttacatatatctagggg gtcatggtcgtctgggatttagtagcagttctttgtccaaagggtccgctgagagttttagtagaaactgctcaggagag aaatga |
|
Protein
| Protein ID | pfu_aug2.0_1634.1_15159.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1634.1_15159.t1 MSLTLDVDLNADSDSELDSETSPLMNATAAPLDPSRNRLYGEPVPAQRRSGIREELYQGAETQTDSERNIQNNSNDANRE SRSSTTRRRRGQSGTEEEDDTLLYGAKHVIMLFVPVTLCMAVVVATISSVAFYTKKGGYLIYTPFHDADKADADTGTKIW QSVANAGILLGVICVMTILLLVLYKYRCYKVIHGWLIISSLMLLFLFSYIYLGGHGRLGFSSSSLSKGSAESFSRNCSGE K |
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