Gene
| Gene Model ID | pfu_aug2.0_164.1_13708 |
|---|---|
| Locus | scaffold164.1 : 29086 ... 30974 : + |
| To GenomeBrowser | scaffold164.1:29086..30974 |
| Genes list of scaffold | scaffold164.1 |
| Synonym | pfu_aug1.0_248.1_14935 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| twist-related protein 2 | GO:0005515 GO:0006366 GO:0030154 GO:0044424 GO:0048513 GO:0048523 GO:0051241 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_164.1_13708.t1 | 2 | 1 | HLH | 41 | 50 | 3.0e-19 | 68.4 | 0.52 | 2600.0 | -1.8 |
| pfu_aug2.0_164.1_13708.t1 | 2 | 2 | HLH | 84 | 134 | 3.0e-19 | 68.4 | 1.3e-22 | 6.2e-19 | 67.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_164.1_13708.t1 | gi|637330887|ref|XP_003224520.2| | PREDICTED: twist-related protein 2-like [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_164.1_13708.t1 | gi|573882249|ref|XP_006629308.1| | PREDICTED: twist-related protein 2-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_164.1_13708.t1 | gi|632963445|ref|XP_007897889.1| | PREDICTED: twist-related protein 1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_164.1_13708.t1 | gi|634823578|ref|XP_007939709.1| | PREDICTED: twist-related protein 2 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_164.1_13708.t1 | gi|507641848|ref|XP_004701748.1| | PREDICTED: twist-related protein 2 [Echinops telfairi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_164.1_13708.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_164.1_13708.t1 atgattccaaagacaaatatgtcggttgatttcggacattttcacggtggtcaagcggtcaagcaagagacaaattcgga cagttttacgtatttagagagtgaacttgacatcaagcgcaaaaatagaaaacggagcctttcaaagagtagtgacagtt tacaaagtgcgtcatctccggaaagttttgatgatgtccacacaaaaagacagaagaaaaagcagctttcattcgatgac attcagacacaacgcgtcatggcaaatgttagagagcgtcaacgcacacagtcactcaatgacgcattcgcgcagttgcg tcaaatcattcctacacttccgtcagacaaactgagtaaaatccagacgctgaagttagcgacgagatatattgatttct tatacagcgtgttgagaagtgacaatacgtttgaaatatacgccaataataaaatgtctagttgtaactatgtggccaat gagagactgagttatgcattttctgtctggagaatggagggatcatgggccatgtcatctgattga |
|
Protein
| Protein ID | pfu_aug2.0_164.1_13708.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_164.1_13708.t1 MIPKTNMSVDFGHFHGGQAVKQETNSDSFTYLESELDIKRKNRKRSLSKSSDSLQSASSPESFDDVHTKRQKKKQLSFDD IQTQRVMANVRERQRTQSLNDAFAQLRQIIPTLPSDKLSKIQTLKLATRYIDFLYSVLRSDNTFEIYANNKMSSCNYVAN ERLSYAFSVWRMEGSWAMSSD |
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