Gene
| Gene Model ID | pfu_aug2.0_164.1_13716 |
|---|---|
| Locus | scaffold164.1 : 304213 ... 323787 : + |
| To GenomeBrowser | scaffold164.1:304213..323787 |
| Genes list of scaffold | scaffold164.1 |
| Synonym | pfu_aug1.0_15228.1_68837 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tubulin gamma-1 chain | GO:0000930 GO:0003924 GO:0005525 GO:0005874 GO:0007020 GO:0008152 GO:0031122 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_164.1_13716.t1 | 1 | 1 | Tubulin | 8 | 178 | 0.0 | 184.6 | 0.0 | 0.0 | 183.6 |
| pfu_aug2.0_164.1_13716.t1 | 1 | 1 | Tubulin_C | 216 | 344 | 0.0 | 163.8 | 0.0 | 0.0 | 163.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_164.1_13716.t1 | gi|524870882|ref|XP_005092221.1| | PREDICTED: tubulin gamma-1 chain-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_164.1_13716.t1 | gi|701375943|ref|XP_009992487.1| | PREDICTED: tubulin gamma-1 chain [Chaetura pelagica] | 0.0 |
| pfu_aug2.0_164.1_13716.t1 | gi|514709893|ref|XP_005011230.1| | PREDICTED: tubulin gamma-1 chain, partial [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_164.1_13716.t1 | gi|677981621|ref|XP_009073355.1| | PREDICTED: tubulin gamma-1 chain, partial [Acanthisitta chloris] | 0.0 |
| pfu_aug2.0_164.1_13716.t1 | gi|41053862|ref|NP_957202.1| | tubulin gamma-1 chain [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_164.1_13716.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_164.1_13716.t1 atgttatgtatattattggctgatgatgaacactacattcccagagctgtcctactagatctggagccgagagtcatcaa caccatcatgaactcaccatacgccaacctgtataaccctgaaaatatatacctgtccaagcacggtgggggagcaggga acaactgggcctctggttactgtcaggcagagaagttatatgaggagatatttgacatcatagacagagaagccgacggt agtgacagtttagagggttttgttctgtgtcattctatagccggcggcacaggatcaggaatgggttcatacttattgga gagacttaatgacaggtttccaaagaagttagtacagacatactcagtgttccctaacttggacgagatgtcagatgtcg tggtgcagccttacaactcgttactaactctgaaaagacttacacaaaatgccgactgtgtggttgtattggataacaca gctttgaataggatagctgctgacagacttcacatagaaactccaaacttctcacaaatcaaccaactggtttccacggt gatgtctacaagtacagccaccctgcgttaccctggttatatgaacaacgatctgattggtctgatagcctcccttatac ctacaccaagattgcattacctgatgacgggatatacacctcttgccacggatatgaacgttgccagtgtgagaaaaact acagtattagatgtgatgcgacggttactacagcccaaaaacatgatggtctctactccagtacaaagacaagccaacca ttgttatatctctatactcaatattatacagggcgaggtggatccaacacaggtacacaaaagtttacagcggatcaggg agcgtaagctggcccagttcattccctggggaccggccagtatccaagtagctttatcacggaagtctccctacatacag acatctcatagagtaagcgggctcatgctggccaaccatacgagtatatctagtttgtttgagcgcaccctcagacagta cgacaagttaaggaagagagaagctttcatggatcagtttaagaaagaagcaatgtttaaggacaatttagatgagtttg ataattctcgagaagtaattcagcaacttgtagatgagtatcaggcggcgacaaaacctgactatctatcatggggaaca caacagaaacccacggcatcttctccgttatactatgtaagatattgtgggacagtctatttggaaaccctcgtattccc aaacaatttgagcagggattttaagccaattaaaatgggcgttacaaaatccctccaacaaaagagagctgaaaccgttc aaactgacagtttcattggttactatagataa |
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Protein
| Protein ID | pfu_aug2.0_164.1_13716.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_164.1_13716.t1 MLCILLADDEHYIPRAVLLDLEPRVINTIMNSPYANLYNPENIYLSKHGGGAGNNWASGYCQAEKLYEEIFDIIDREADG SDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRFPKKLVQTYSVFPNLDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNT ALNRIAADRLHIETPNFSQINQLVSTVMSTSTATLRYPGYMNNDLIGLIASLIPTPRLHYLMTGYTPLATDMNVASVRKT TVLDVMRRLLQPKNMMVSTPVQRQANHCYISILNIIQGEVDPTQVHKSLQRIRERKLAQFIPWGPASIQVALSRKSPYIQ TSHRVSGLMLANHTSISSLFERTLRQYDKLRKREAFMDQFKKEAMFKDNLDEFDNSREVIQQLVDEYQAATKPDYLSWGT QQKPTASSPLYYVRYCGTVYLETLVFPNNLSRDFKPIKMGVTKSLQQKRAETVQTDSFIGYYR |
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