Gene
| Gene Model ID | pfu_aug2.0_165.1_17045 |
|---|---|
| Locus | scaffold165.1 : 244277 ... 247904 : - |
| To GenomeBrowser | scaffold165.1:244277..247904 |
| Genes list of scaffold | scaffold165.1 |
| Synonym | pfu_aug1.0_5722.1_16740 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| alanyl-trna cytoplasmic | GO:0000049 GO:0001942 GO:0002161 GO:0004813 GO:0005524 GO:0005829 GO:0006400 GO:0006419 GO:0006450 GO:0006457 GO:0008270 GO:0016020 GO:0016597 GO:0021680 GO:0030968 GO:0043200 GO:0043524 GO:0050885 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_165.1_17045.t1 | 1 | 1 | DHHA1 | 49 | 116 | 1.3e-10 | 40.8 | 4.1e-14 | 2.1e-10 | 40.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_165.1_17045.t1 | gi|524892201|ref|XP_005102630.1| | PREDICTED: alanine--tRNA ligase, cytoplasmic-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_165.1_17045.t1 | gi|85720049|gb|ABC75593.1| | alanyl-tRNA synthetase isoform 3 [Ictalurus punctatus] | 6.0e-38 |
| pfu_aug2.0_165.1_17045.t1 | gi|241998228|ref|XP_002433757.1| | alanyl-tRNA synthetase, putative [Ixodes scapularis] | 1.0e-36 |
| pfu_aug2.0_165.1_17045.t1 | gi|119572223|gb|EAW51838.1| | alanyl-tRNA synthetase, isoform CRA_a [Homo sapiens] | 2.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_165.1_17045.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_165.1_17045.t1 atgcaggttgtggaggaagccaaaaaaatgattgaagccaatccaaaccagaagtttgttgttcatgaatttaaggcagg atcaaatgctaaggcccttgatgctgcaatgaaacaatacaagaatctcagtccagacactgctgccatattttttactg tggaccgagatgctggtaaaattatatgtatgagctgtacacccaagtccagtatatctaatggtcttactgccaatgcc tgggtatcagaggttgtaccagttataaatggtaaaggaggagggaaggatgcctccgcacaggctaccggcactaatgt ggacaaactggaggaagctcttaacattgccatcaaattcgctgagatgaagttatcatga |
|
Protein
| Protein ID | pfu_aug2.0_165.1_17045.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_165.1_17045.t1 MQVVEEAKKMIEANPNQKFVVHEFKAGSNAKALDAAMKQYKNLSPDTAAIFFTVDRDAGKIICMSCTPKSSISNGLTANA WVSEVVPVINGKGGGKDASAQATGTNVDKLEEALNIAIKFAEMKLS |
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