Gene
| Gene Model ID | pfu_aug2.0_165.1_17046 |
|---|---|
| Locus | scaffold165.1 : 248066 ... 270674 : - |
| To GenomeBrowser | scaffold165.1:248066..270674 |
| Genes list of scaffold | scaffold165.1 |
| Synonym | pfu_aug1.0_5722.1_16740 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| alanine--trna cytoplasmic | GO:0000049 GO:0003743 GO:0004813 GO:0005524 GO:0005525 GO:0005737 GO:0006413 GO:0006419 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_165.1_17046.t1 | 1 | 1 | tRNA-synt_2c | 9 | 590 | 0.0 | 704.8 | 0.0 | 0.0 | 704.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_165.1_17046.t1 | gi|91084029|ref|XP_966465.1| | PREDICTED: alanine--tRNA ligase, cytoplasmic [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_165.1_17046.t1 | gi|752866106|ref|XP_011269528.1| | PREDICTED: alanine--tRNA ligase, cytoplasmic [Camponotus floridanus] | 0.0 |
| pfu_aug2.0_165.1_17046.t1 | gi|383858758|ref|XP_003704866.1| | 0.0 | |
| pfu_aug2.0_165.1_17046.t1 | gi|749747682|ref|XP_011135978.1| | PREDICTED: alanine--tRNA ligase, cytoplasmic isoform X1 [Harpegnathos saltator] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_165.1_17046.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_165.1_17046.t1 atggattgtggtttaactgggaaccaaatccgacagctctttgttgatttcttcaaggagaagaagcacacatatgtcca ctcaaactctgttgtaccactggacgatcctacacttctcttcacaaatgcagggatgaaccagtttaagcccatctttt tgggtacagtggatccaaatagtgacatggcaaagcttgagcgtgcagtcaattcacagaaatgtattcgagcaggtgga aaacataacgacttggacgatgtcggcaaagacgtttatcatcatacattcttcgagatgttaggaaattggtcgtttgg agattattacaaatctgagtgctgtgcctgggcctgggagttcctgacacagagagtcggcatgcctaaagacagattat atgtcacatactttggtggaaatgaaaaatttggacttgctccagatgatgaaactaagaaaatatggcttggtctgggg gttgcggaggatcgagtgctgccttttggtatgaaagataatttctgggagatgggcgagacaggaccttgtggtccatg cacagaaatccactttgataaaataggcggtagaaatgccgcacacttggtaaatctggatgaccctgatgtcatagaaa tctggaaccttgtcttcattcagtttaacagagaatcagagagtgagctgaaggacctgcctcgtaaacactgtgattgt ggtatgggtttagaacgtctggtatcggtgatgcaggggaaaatgtcaaactacgactcagatatcttcacacctctctt tgatgctattcaaaaggctacaaattgcactccataccagggtcgtgtaggtaaggaggatgtagatggtgtagacatgg cgtatagagtgttagccgaccatgtacggacgctcactatcgctctgtcagacggaggtcgccctgataatgttggaaga gggaggattttaaggagaggtgtcagatatgccacagagaaactgaatgccaaaccaggtgtgtttgcttccctagttga cacggtggtacagaatctgggagaggcatttccagaaataacaaaggacccagacttgataaaagatataattaatgaag aggaacaacaatttctgaaaacattaaacagaggacggcgactgttagagagaacaataggcaagctgggagatacgtca tcattacctggtgatatagcatggagattatatgatacatatggatttcccgtagaccttactcaacttatggcagagga aaaaaacctagaagtagacatggagcaatatacagaggccaagaagaaagctcagatactgtctcagggtacaggtggca gtgtgacgtcacaggtgacattagaggtccattccatcagtgagttgcaggataaaggcatagcccccacagacgacagc ctgaagtataaatacacagccgatgtggatggcaaatacagttttgagcctgcatcaggtaaagtgatcgccttacgtcg tggtaaggagtttgtagaggaagtgacgtcaggggaggaatgtggtgtgctgctagatcgtactaacttctatgctgaac aaggaggacagatctatgatgagggatacatggtcaaagaaaacgatgctgacacagaatttaatgtgaagaatgtgttg gttcgtgctggttacgtcctacatgttggtgagatcgagggtacattacgagtcggggatgtcgtgcaattgtatgtcga tgagagtagaaggtgctcagttatgaagaatcacacaggtacacatatgttaaactttggtctcagggaagtactgaaag aggctgatcagaaagggtcattagtggccccagacagacttagatttgacttcactgctaaggctcatcacagatttgaa actcttgaaaaaagtgtaaacaaactgaaaggcttgatggaaaagctacagagtaaagagatgacagaaaaagaacttac tagacaaatcgtggagttggatgacgaaatagctcaatctgtgatatcatattggagaagggatgagctgagaggggaag taaaggggctcaaaaagaaaatggacgacctagataaggcaaagaaggccatgattatgacagagtatctgtag |
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Protein
| Protein ID | pfu_aug2.0_165.1_17046.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_165.1_17046.t1 MDCGLTGNQIRQLFVDFFKEKKHTYVHSNSVVPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAKLERAVNSQKCIRAGG KHNDLDDVGKDVYHHTFFEMLGNWSFGDYYKSECCAWAWEFLTQRVGMPKDRLYVTYFGGNEKFGLAPDDETKKIWLGLG VAEDRVLPFGMKDNFWEMGETGPCGPCTEIHFDKIGGRNAAHLVNLDDPDVIEIWNLVFIQFNRESESELKDLPRKHCDC GMGLERLVSVMQGKMSNYDSDIFTPLFDAIQKATNCTPYQGRVGKEDVDGVDMAYRVLADHVRTLTIALSDGGRPDNVGR GRILRRGVRYATEKLNAKPGVFASLVDTVVQNLGEAFPEITKDPDLIKDIINEEEQQFLKTLNRGRRLLERTIGKLGDTS SLPGDIAWRLYDTYGFPVDLTQLMAEEKNLEVDMEQYTEAKKKAQILSQGTGGSVTSQVTLEVHSISELQDKGIAPTDDS LKYKYTADVDGKYSFEPASGKVIALRRGKEFVEEVTSGEECGVLLDRTNFYAEQGGQIYDEGYMVKENDADTEFNVKNVL VRAGYVLHVGEIEGTLRVGDVVQLYVDESRRCSVMKNHTGTHMLNFGLREVLKEADQKGSLVAPDRLRFDFTAKAHHRFE TLEKSVNKLKGLMEKLQSKEMTEKELTRQIVELDDEIAQSVISYWRRDELRGEVKGLKKKMDDLDKAKKAMIMTEYL |
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