Gene
| Gene Model ID | pfu_aug2.0_1653.1_11789 |
|---|---|
| Locus | scaffold1653.1 : 80077 ... 83005 : - |
| To GenomeBrowser | scaffold1653.1:80077..83005 |
| Genes list of scaffold | scaffold1653.1 |
| Synonym | pfu_aug1.0_14511.1_54063 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| acetylcholine receptor subunit beta-like | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1653.1_11789.t1 | 1 | 1 | Neur_chan_LBD | 26 | 220 | 4.69996e-42 | 143.5 | 1.4013e-45 | 6.8005e-42 | 143.0 |
| pfu_aug2.0_1653.1_11789.t1 | 2 | 1 | Neur_chan_memb | 231 | 347 | 1.2e-15 | 58.0 | 2.5e-19 | 1.2e-15 | 58.0 |
| pfu_aug2.0_1653.1_11789.t1 | 2 | 2 | Neur_chan_memb | 360 | 395 | 1.2e-15 | 58.0 | 0.15 | 750.0 | -0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1653.1_11789.t1 | gi|189532001|ref|XP_001921314.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 [Danio rerio] | 2.00386e-43 |
Transcript
| Transcript ID | pfu_aug2.0_1653.1_11789.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1653.1_11789.t1 atggaaggtaaaacaagtgctatagttttgtcaatgttggtcagtttgggtgtatgtatgacacgtaactcagagtacga tctacacaatgttctctttgccaattattcgtcagaaattcgtcccgtggacgatcaaaatgataagctgacaatcaatg tttctgctttcctgtctgccatcgttgaactggacgaaccttcgggtcagctgaccacaaacatgggctttatccttacg tggacggacatcggtctaacgtgggatccagtgaacttcgagggacggactcgcacctttgtgggttacaacaagatttg gacccctacagtgtttctcgtcaacccaagtcgagatttggaacgcctaggagaactagataggaaagtggccattgact ccaatggcaccgtaacgtggtctgcgggtgggatagtatattcaatttgtaatgttgacgtcacattctttccttatgat gaacagatttgcgtcatgaagttcaattcgtttgaatacggtccgttaattgagtacgaaatactttcacctactctgga tttaacctttttcggcgaaaacggtgtgtggtctttagaaaagacagacgtgactatcgacactaccagcacgtttactc tacagtgtactttgtatttgaccaggagatcaacattctctcaactgaatataatggtgcccataatgctcctggtgttc ctgaacattgcggtgtttctacttccgccggaaagcggagagcggattggatttgccgtcaccatcttattgtcaatctc tgtatatatgacgatagtgacagaccgtcttcccaacacatcaaagcctgtctcaatgttgaattacattctagttatat ttttggcccaatcagctgtcatatgcatcaaaaccgtcgtcggactgcgtctttatgccaaaggcgataagaagctaacc tcgcccttgctgttgtgcttcgtaaaagcaatgaaatgtaaatgtagaaataaacggaaagttcaaattgatagtgatca cagttccgaggaagtcaatggagatccacagttccggctgaaggaagcgaaattcaacgaggaggaacccttaacatgga aggcattggcagaatcgtttgatacgttttctctttgtttcaaccttgtaataactatcgtggtcgccctgattttcatg gcggtggttgttattgtaaaacccgaacattaa |
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Protein
| Protein ID | pfu_aug2.0_1653.1_11789.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1653.1_11789.t1 MEGKTSAIVLSMLVSLGVCMTRNSEYDLHNVLFANYSSEIRPVDDQNDKLTINVSAFLSAIVELDEPSGQLTTNMGFILT WTDIGLTWDPVNFEGRTRTFVGYNKIWTPTVFLVNPSRDLERLGELDRKVAIDSNGTVTWSAGGIVYSICNVDVTFFPYD EQICVMKFNSFEYGPLIEYEILSPTLDLTFFGENGVWSLEKTDVTIDTTSTFTLQCTLYLTRRSTFSQLNIMVPIMLLVF LNIAVFLLPPESGERIGFAVTILLSISVYMTIVTDRLPNTSKPVSMLNYILVIFLAQSAVICIKTVVGLRLYAKGDKKLT SPLLLCFVKAMKCKCRNKRKVQIDSDHSSEEVNGDPQFRLKEAKFNEEEPLTWKALAESFDTFSLCFNLVITIVVALIFM AVVVIVKPEH |
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