Gene
| Gene Model ID | pfu_aug2.0_1661.1_05172 |
|---|---|
| Locus | scaffold1661.1 : 117516 ... 140946 : + |
| To GenomeBrowser | scaffold1661.1:117516..140946 |
| Genes list of scaffold | scaffold1661.1 |
| Synonym | pfu_aug1.0_8833.1_02656 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1661.1_05172.t1 | 4 | 1 | TIMP | 33 | 208 | 1.3e-23 | 83.5 | 3.6e-27 | 1.3e-23 | 83.5 |
| pfu_aug2.0_1661.1_05172.t1 | 4 | 2 | TIMP | 238 | 281 | 1.3e-23 | 83.5 | 0.4 | 1500.0 | -1.4 |
| pfu_aug2.0_1661.1_05172.t1 | 4 | 3 | TIMP | 386 | 474 | 1.3e-23 | 83.5 | 4.0 | 15000.0 | -11.5 |
| pfu_aug2.0_1661.1_05172.t1 | 4 | 4 | TIMP | 586 | 611 | 1.3e-23 | 83.5 | 1.4 | 5100.0 | -3.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1661.1_05172.t1 | gi|156340073|ref|XP_001620345.1| | hypothetical protein NEMVEDRAFT_v1g223209 [Nematostella vectensis] | 2.0e-31 |
| pfu_aug2.0_1661.1_05172.t1 | gi|672023667|ref|XP_008756169.1| | PREDICTED: serine/arginine-rich splicing factor 4-like isoform X2 [Rattus norvegicus] | 1.0e-29 |
| pfu_aug2.0_1661.1_05172.t1 | gi|672023665|ref|XP_008756168.1| | PREDICTED: serine/arginine-rich splicing factor 4-like isoform X1 [Rattus norvegicus] | 9.0e-23 |
| pfu_aug2.0_1661.1_05172.t1 | gi|268568004|ref|XP_002647925.1| | Hypothetical protein CBG23823 [Caenorhabditis briggsae] | 2.0e-19 |
| pfu_aug2.0_1661.1_05172.t1 | gi|268563570|ref|XP_002646968.1| | Hypothetical protein CBG21394 [Caenorhabditis briggsae] | 4.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_1661.1_05172.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1661.1_05172.t1 atgataagtgctgtcctcaatgctgtagacaaagattttaaggattgccttgctgtcgtcatcttccttctcctctgtca tctgtcatctttcatcaatgcccaggcgtgtgttcctgaacatcctcaaaggaacttctgtgaagcagcatgggctatta aaggcaaagtgattgagttcatggacacacccagcaacataagaggggacgctccaatagagagacagtatcatataagg gtggatagagtgtataagaaacctatttcctggaatgggagttggaagaaaggtaaaaagacgtggataactacagacgg tgatatggcaaatcaaggtgtccaacttaaagaaggaaaatcatatatgctaacagggatggacagagagggtcgggcct ttatgacgagatgtaactggcatcaaagatggacaggagttaagaagtgtcacagagccgctcttcaatctggagtattc acaaggaactgcttctgtcagatttcaacgtgtcatggcgccaattgttatcaacctgtgcagagaagtgggtgtgtcaa caacaacaatgagagaagtctggatgtatgtgtatttaacaacaatcttggaacatgtgactggaacgcttgtggactac tagaaaacaaaagacggaaagcctttattgaaagaaggaaaaatttagcattaggtcccgcatatcaacaacaaaaacaa caacaacagcaagctcaaatacaacagcaactggcattgcaacaacaacagcaacgtcaacaacagcaatatttacaaca acagcaagaacagtatcaacaacagcaacttttgcaaacaatacagcaacatttacaacagcaacaggcgcctcctacaa cagcagcaccatctttgtttgatatgggaatgggtgggatgggtatgggtatggcgatgggagagggaatgtcacaccac aggaatgttacaacacaggaatgctacaactcaggaatgctacaacacaggaatgttacaactcaggactgttacaacac aggaatgttacaatacaggaatattacaatacaggaatgttacattacaggaatgttacaatacagaaataatacaatac aggaatgttacaatacaggaatgttacaagtcaggaatgttgtaatacaggaatattacaacacaggaatgttacaaaac aggaatgttacaacacaggaatgttacaaaacagaaatgttacaacacaggaatgttacaccacaggaatgttacaacac agaaatgttaaaacacaggaatgttacaacacaggaatgtcataccacaggaatgttacaacacagaaatgttacaacac aggaatgttacaccacaggaatgttacaacntgttacaacacaggaatgttttaacgcaaaactattacaaaacagaaat gttacaacacagaaatgttacaacacagaaatgttacaacacagaaatgttacaacacaggaatgttacaacacagtaat gttacaccacagaaaatcagagaccgaaggcatacaaaatcaggagaaaacagaaaccaaagcaaacaaacaaaatcctc caccacatgaaaagaagcggactcccgatatgagagtgagaccaggtgcccagaaagagaatgttacaacacagggatgt tacaactcaggaatgttacaacacaggaatattacagcacagaaatgttacaacacagaaatgttacaacacagaaatgt taaaacacgggaatgttacaacacaggaatgttacaacacagaaatgttacaacacagaaatgttacaacacaggaatgt tacagcacagaaatgttacaacacaggaatattacaatacaggaatgttacaacacaggaatgttgcaactcaggaatgt tacaactcaggaatgttacaatacatgaatgcataa |
|
Protein
| Protein ID | pfu_aug2.0_1661.1_05172.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1661.1_05172.t1 MISAVLNAVDKDFKDCLAVVIFLLLCHLSSFINAQACVPEHPQRNFCEAAWAIKGKVIEFMDTPSNIRGDAPIERQYHIR VDRVYKKPISWNGSWKKGKKTWITTDGDMANQGVQLKEGKSYMLTGMDREGRAFMTRCNWHQRWTGVKKCHRAALQSGVF TRNCFCQISTCHGANCYQPVQRSGCVNNNNERSLDVCVFNNNLGTCDWNACGLLENKRRKAFIERRKNLALGPAYQQQKQ QQQQAQIQQQLALQQQQQRQQQQYLQQQQEQYQQQQLLQTIQQHLQQQQAPPTTAAPSLFDMGMGGMGMGMAMGEGMSHH RNVTTQECYNSGMLQHRNVTTQDCYNTGMLQYRNITIQECYITGMLQYRNNTIQECYNTGMLQVRNVVIQEYYNTGMLQN RNVTTQECYKTEMLQHRNVTPQECYNTEMLKHRNVTTQECHTTGMLQHRNVTTQECYTTGMLQXVTTQECFNAKLLQNRN VTTQKCYNTEMLQHRNVTTQECYNTVMLHHRKSETEGIQNQEKTETKANKQNPPPHEKKRTPDMRVRPGAQKENVTTQGC YNSGMLQHRNITAQKCYNTEMLQHRNVKTRECYNTGMLQHRNVTTQKCYNTGMLQHRNVTTQEYYNTGMLQHRNVATQEC YNSGMLQYMNA |
|