Gene
| Gene Model ID | pfu_aug2.0_1666.1_21732 |
|---|---|
| Locus | scaffold1666.1 : 79626 ... 85738 : + |
| To GenomeBrowser | scaffold1666.1:79626..85738 |
| Genes list of scaffold | scaffold1666.1 |
| Synonym | pfu_aug1.0_308.1_29187 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1666.1_21732.t1 | 1 | 1 | zf-HIT | 4 | 32 | 2.7e-09 | 36.4 | 1.6e-12 | 4.1e-09 | 35.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1666.1_21732.t1 | gi|380030543|ref|XP_003698905.1| | 7.0e-38 | |
| pfu_aug2.0_1666.1_21732.t1 | gi|572297196|ref|XP_006614804.1| | PREDICTED: box C/D snoRNA protein 1-like, partial [Apis dorsata] | 9.0e-38 |
| pfu_aug2.0_1666.1_21732.t1 | gi|571516610|ref|XP_006558045.1| | PREDICTED: box C/D snoRNA protein 1-like [Apis mellifera] | 1.0e-36 |
| pfu_aug2.0_1666.1_21732.t1 | gi|350416025|ref|XP_003490820.1| | 7.0e-36 | |
| pfu_aug2.0_1666.1_21732.t1 | gi|340711572|ref|XP_003394349.1| | PREDICTED: box C/D snoRNA protein 1 [Bombus terrestris] | 1.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_1666.1_21732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1666.1_21732.t1 atgtcaaagaggaagtgtgaagtatgtgatgaagtaattgccaaatatacatgtccacgctgccaaaaaaggacttgttc attatcatgtgtgaagaaacataaaggagaaaccaagtgtgatggaattcgagataaaactgcctatttaccaatgaagg aattcacagatatagctcttttgaatgattacagatttctagaagaagcaggaagaatagcagacaattctaaaagagat cctaaaaaacgcagaattacacatgctggatatttgaatcagattaaaagagctgctttaaaaagagacataaagttaaa gttccttccatacccaatgatgagaagaaagagcaacacaactacactctcaaactatcacaagactttaatctttgatg ccagcatttga |
|
Protein
| Protein ID | pfu_aug2.0_1666.1_21732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1666.1_21732.t1 MSKRKCEVCDEVIAKYTCPRCQKRTCSLSCVKKHKGETKCDGIRDKTAYLPMKEFTDIALLNDYRFLEEAGRIADNSKRD PKKRRITHAGYLNQIKRAALKRDIKLKFLPYPMMRRKSNTTTLSNYHKTLIFDASI |
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