Gene
| Gene Model ID | pfu_aug2.0_1668.1_28449 |
|---|---|
| Locus | scaffold1668.1 : 2521 ... 17975 : - |
| To GenomeBrowser | scaffold1668.1:2521..17975 |
| Genes list of scaffold | scaffold1668.1 |
| Synonym | pfu_aug1.0_6277.1_23989 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1668.1_28449.t1 | 1 | 1 | TH1 | 3 | 574 | 0.0 | 821.8 | 0.0 | 0.0 | 821.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1668.1_28449.t1 | gi|676469296|ref|XP_009058486.1| | hypothetical protein LOTGIDRAFT_163718 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1668.1_28449.t1 | gi|556969861|ref|XP_005993628.1| | PREDICTED: negative elongation factor D-like isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1668.1_28449.t1 | gi|76633005|ref|XP_592881.2| | PREDICTED: negative elongation factor C/D isoform X2 [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1668.1_28449.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1668.1_28449.t1 atggcagattatgaggaagatgacaacatgtgggaagatcatgatacgggaaatgagtccccagaggcagaagaagagca cgatgaagaggagagccgagccatacaacaggaatgtgtggaagcgttctcctgtaaagattacatcatggaaccgggag tgtttcagatgcttaaaaaatatctgcaagctggtggttctccagagagagtggttgagatgttgtcagataattacact gcagtggctcagacagtcaaccttctggctgagtggctcattcaagctggagtcgacattaagatagtacaggagatggt agaggaccatctaaagaacatcatccttaaacactttgaccccaggaaagctgattctatattctctgatgaaggagaga caccatcttggctggctgagatgatagaataccctacatggagagaactattctataaactagcagaggaatatcctgac tgtctcatgctcaacttcactgtcaagttgatttctgatgctggctaccaaggggagataacctctgtatcaacagcatg tcatcaaattgaagttttctctcgagtgttgaggacttctatcactagtgtactagaatctggagaagagaatctcggca aaaatctaccagaatttacaaaaatggtctgtcacggagaacacacctatctgtacagtcaggtgctgatgcacatttta tctcaggaacccaagggtggatctaatatcaggagactgtgtcaggaactacagaaaagtgctaatgaaagagaactgga tgtgacccctataacactggctctcagtggtgccgcggcttacccacgggcatgtcaagcattgtcatcaatgctgtcca ggaatgccctcaacccagcagatatcactatactattcaggatgtactctgagatgaaccctcccccagtagatctgatc agagtgccagctttcttagagcttctaatagaggcgttattcaagccaaactccaggatcaatccagaacataaatccaa gtacatatttgttctgtcttatgcagccagtgtcacagaaatgtataaaaagggtcagagaaaaaacatcaaccgagatg agttaaaaccaactacacaagctctagagaaagtggaagctctgtgctctaaaaacaaaagctcttcagagcttatagga gatgtcaatactttatttttgaatatcaaatttccggtgatagcgtacggtgtattacgatgggtagattacacagtgtc agatgctagctacttcaaattaaacacagatcacacacctctacacttggtacttatcgacgagatagtgaccaatcatc agttattgcatcaacaagcccttgatctgcttgtcaggttgtttgagtcttcctttgaggaactggatgttctagtcagg cttgagctgaagaagacattactagacagaatggtacatttattcagcagaggttttgtgattcccgttgttacgtatat aaagaactgcttagagaaacaggacactgacatatcattgataagacattttgtcactgaggtacttgacatcattgcac ctccatatacaccagaatttgcccagttatttttaccgttgttggagagcaaagacattacagcctcaatacgatcagaa gatggaacagacccagtatcagaatttataactcattgcaagccttga |
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Protein
| Protein ID | pfu_aug2.0_1668.1_28449.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1668.1_28449.t1 MADYEEDDNMWEDHDTGNESPEAEEEHDEEESRAIQQECVEAFSCKDYIMEPGVFQMLKKYLQAGGSPERVVEMLSDNYT AVAQTVNLLAEWLIQAGVDIKIVQEMVEDHLKNIILKHFDPRKADSIFSDEGETPSWLAEMIEYPTWRELFYKLAEEYPD CLMLNFTVKLISDAGYQGEITSVSTACHQIEVFSRVLRTSITSVLESGEENLGKNLPEFTKMVCHGEHTYLYSQVLMHIL SQEPKGGSNIRRLCQELQKSANERELDVTPITLALSGAAAYPRACQALSSMLSRNALNPADITILFRMYSEMNPPPVDLI RVPAFLELLIEALFKPNSRINPEHKSKYIFVLSYAASVTEMYKKGQRKNINRDELKPTTQALEKVEALCSKNKSSSELIG DVNTLFLNIKFPVIAYGVLRWVDYTVSDASYFKLNTDHTPLHLVLIDEIVTNHQLLHQQALDLLVRLFESSFEELDVLVR LELKKTLLDRMVHLFSRGFVIPVVTYIKNCLEKQDTDISLIRHFVTEVLDIIAPPYTPEFAQLFLPLLESKDITASIRSE DGTDPVSEFITHCKP |
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