Gene
| Gene Model ID | pfu_aug2.0_1668.1_28450 |
|---|---|
| Locus | scaffold1668.1 : 18766 ... 35339 : + |
| To GenomeBrowser | scaffold1668.1:18766..35339 |
| Genes list of scaffold | scaffold1668.1 |
| Synonym | pfu_aug1.0_16331.1_32680 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1668.1_28450.t1 | 5 | 1 | VCBS | 68 | 83 | 9.1e-10 | 38.7 | 0.0008 | 5.9 | 7.3 |
| pfu_aug2.0_1668.1_28450.t1 | 3 | 1 | FG-GAP | 69 | 88 | 2.6e-13 | 49.2 | 1.4e-05 | 0.1 | 12.2 |
| pfu_aug2.0_1668.1_28450.t1 | 5 | 2 | VCBS | 166 | 177 | 9.1e-10 | 38.7 | 2.0 | 15000.0 | -3.6 |
| pfu_aug2.0_1668.1_28450.t1 | 5 | 3 | VCBS | 269 | 290 | 9.1e-10 | 38.7 | 0.68 | 5100.0 | -2.1 |
| pfu_aug2.0_1668.1_28450.t1 | 5 | 4 | VCBS | 489 | 509 | 9.1e-10 | 38.7 | 3.3e-06 | 0.025 | 14.9 |
| pfu_aug2.0_1668.1_28450.t1 | 3 | 2 | FG-GAP | 492 | 510 | 2.6e-13 | 49.2 | 1.7e-07 | 0.0012 | 18.4 |
| pfu_aug2.0_1668.1_28450.t1 | 5 | 5 | VCBS | 530 | 548 | 9.1e-10 | 38.7 | 7.2e-06 | 0.054 | 13.8 |
| pfu_aug2.0_1668.1_28450.t1 | 3 | 3 | FG-GAP | 531 | 548 | 2.6e-13 | 49.2 | 2.8e-07 | 0.0021 | 17.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1668.1_28450.t1 | gi|676446293|ref|XP_009051032.1| | hypothetical protein LOTGIDRAFT_159137 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1668.1_28450.t1 | gi|524888456|ref|XP_005100799.1| | PREDICTED: uncharacterized protein LOC101859492 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1668.1_28450.t1 | gi|291230320|ref|XP_002735115.1| | PREDICTED: uncharacterized protein LOC100378520 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1668.1_28450.t1 | gi|390356446|ref|XP_003728789.1| | 1.96182e-44 | |
| pfu_aug2.0_1668.1_28450.t1 | gi|470417035|ref|XP_004336950.1| | FGGAP repeat domain containing protein [Acanthamoeba castellanii str. Neff] | 6.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_1668.1_28450.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1668.1_28450.t1 atggggagtgttgatgaggtatgggacagatttagccgtctaatcaagccacagtacatcatctttatagtcctgtgtag tataataggatacttactaagagccagcgactcctaccaccttaaacctgtgtggaggaagcgtagtgaacctcaccact tttacaacaaaaaatttcctacagatagagacaaacttccgtcaccaatagtaacagatcttgacggagatggaatcaat gaaattctactcatcactcatgatttcagactaaatgtcttgacactacctgagccagcccctcaggatgaggaggataa aactctacctcacgtcgaggtcaaggtcaaaatcatattgccattgacacccatggaagatggtgggaagagtcgtcctg ctgccatgggaacaggatttacagtcccatatgcctcaatgatgcagatacgcaagcaaatagttgttgtattaatgact gattggcagatattttgctacgacaacaacttagagttgctatggcaacagaggttaatgaacatcagccatgtggagga cacctacgaggtcaaggccatgggaattctgataacatctcataatgtgaagaagaacgaccagggtctgatcatcgttg gcggaagttttacccataaagtccaccaggtggagacatcaaccaaagcttcagagacaaacagtacagaggatgataat gaaggacaaggtaacctcaccacagaggacaacactctcacacacttcagttcgttcgcacttagtgctaaggacgggtc catacgatggcatcatcttccaggagattttggagaaatcgctcccgatataaaggatattcatggtgatcatcactgga aattagctttgaagagacatcgtctacacactggagaggctcactggactgagtataaagatgaactagccaagtttctg atggaatgtggtcaacatacagtacgtcttaatttacaatattgtagggaagggagtatgttgtcctgttggacaatctt aggccatgtaaaaattaatagttgttctcagataattgggtctaaaaaagtggcaagtgtagctaagaagtcaggatttt tccgatatttgctgggacatcatctccccacggtatctcagaagtatgacatcataacattcgcctcggtaggaaggata tcatcatgggacaaggaaggcaatgctaattggcagactcttacaaggactggttgggcaaaagctgctctggacaagaa aagaaacaaagacactcagaaagaacaattcacggaatttatggaggagtttttacccagtagaacactgatgtcactta ctgtatttgatagacaggatgtggtagtttactctggttggagtgagttaacagtcgtcagtctggtagatggtacagag ctagctgaacactctctaccatgtcagccaacagctccccttgttactggagactttgataatgatggacttaatgacat aatagttacttgtagacttggtaagtccggtagatggtacagagctagctctcttccatgtcaacccacagctccccttg ttactggagactttaataatgatggacttaatgacatcatagtcacttgtagacttggtggtgtagctgggacaaaatta agtggatgctttgcataa |
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Protein
| Protein ID | pfu_aug2.0_1668.1_28450.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1668.1_28450.t1 MGSVDEVWDRFSRLIKPQYIIFIVLCSIIGYLLRASDSYHLKPVWRKRSEPHHFYNKKFPTDRDKLPSPIVTDLDGDGIN EILLITHDFRLNVLTLPEPAPQDEEDKTLPHVEVKVKIILPLTPMEDGGKSRPAAMGTGFTVPYASMMQIRKQIVVVLMT DWQIFCYDNNLELLWQQRLMNISHVEDTYEVKAMGILITSHNVKKNDQGLIIVGGSFTHKVHQVETSTKASETNSTEDDN EGQGNLTTEDNTLTHFSSFALSAKDGSIRWHHLPGDFGEIAPDIKDIHGDHHWKLALKRHRLHTGEAHWTEYKDELAKFL MECGQHTVRLNLQYCREGSMLSCWTILGHVKINSCSQIIGSKKVASVAKKSGFFRYLLGHHLPTVSQKYDIITFASVGRI SSWDKEGNANWQTLTRTGWAKAALDKKRNKDTQKEQFTEFMEEFLPSRTLMSLTVFDRQDVVVYSGWSELTVVSLVDGTE LAEHSLPCQPTAPLVTGDFDNDGLNDIIVTCRLGKSGRWYRASSLPCQPTAPLVTGDFNNDGLNDIIVTCRLGGVAGTKL SGCFA |
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