Gene
| Gene Model ID | pfu_aug2.0_1668.1_28451 |
|---|---|
| Locus | scaffold1668.1 : 36295 ... 55235 : - |
| To GenomeBrowser | scaffold1668.1:36295..55235 |
| Genes list of scaffold | scaffold1668.1 |
| Synonym | pfu_aug1.0_15980.1_54254 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1668.1_28451.t1 | 2 | 1 | Ldl_recept_a | 400 | 437 | 7.2e-14 | 51.4 | 7.5e-10 | 1.2e-06 | 28.2 |
| pfu_aug2.0_1668.1_28451.t1 | 2 | 2 | Ldl_recept_a | 441 | 478 | 7.2e-14 | 51.4 | 6.6e-10 | 1.1e-06 | 28.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1668.1_28451.t1 | gi|676482790|ref|XP_009062816.1| | hypothetical protein LOTGIDRAFT_167107 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1668.1_28451.t1 | gi|524877953|ref|XP_005095671.1| | PREDICTED: dentin sialophosphoprotein-like [Aplysia californica] | 7.0e-39 |
| pfu_aug2.0_1668.1_28451.t1 | gi|676482792|ref|XP_009062817.1| | hypothetical protein LOTGIDRAFT_235372 [Lottia gigantea] | 9.0e-37 |
| pfu_aug2.0_1668.1_28451.t1 | gi|270013129|gb|EFA09577.1| | hypothetical protein TcasGA2_TC011691 [Tribolium castaneum] | 6.0e-27 |
| pfu_aug2.0_1668.1_28451.t1 | gi|524877955|ref|XP_005095672.1| | PREDICTED: uncharacterized protein LOC101857100 [Aplysia californica] | 3.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_1668.1_28451.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1668.1_28451.t1 atgtcaagacactcatcaataatccttatcacagttcttgcaacattaattggcagaattcagactcagagtgcaaacac caactccacccaaatcgacatttgtaaaactcagaacatcaaggattatcagataggctataccggctacgtaggtataa agaccaattcaccgtccaatgggattaagccttgtatactgaggattgagagctgtgcgtcgtgttatctgagattacag ccgtctggttatgactggcatttaggtagcagtacagatggcttagataagttagccactacagagtgtatcactgggag gtcatacttgtttgcgtttgatggtcattacatggaggaaacgttaaagttctataccagcagcggtatagatggattct ctcacccccttaacactacgtccagtattctctatgtggcatactgtggaacaccggtggatatatccctaaaataccaa gtcctattcaagaagaaaaccattgtgagtggttcaggcaccatcaagtcaccatttttcccattaagctatgttcaaaa tggcgagcagttcatatatgagttccgaagcatggagggaaagtatattacgctcacctttgaagactgggatttgaagc ctgctagtgagatctattttgagtcctccaatatccagtcacctgtatcgtatatggatgatcgcccgatcgtacagtcc aatggaccgtatatgacagcagtatttagtacgggcagtaacttgatcggaggaggggaacgcaaatatctcggattcaa attcagttacagattccatgaaaataagcaagatttacaagatttacccagtacatctgactgtggaggatatatatgga acagcgttggaggcacgtttgaattcaacaaacactacattttctctggtactaaacatgactgcgtgtgggtggtacag aagaaacaaggatacgacaatgtatatttgaagctacttactttcactggtcattttggaagttcggtagaggtgagaga cggcttaacatcagatggaacgttactgaacaccatttataataacatgacacgatacagagctttcacaagcacggtgg ggttctacgtacgcttacagggacacttctcaagagaggattacacaagaatgtcttacgcttcatattctaaagtatgt agtgcaggtggccattataactgtgataacctacgatgtatcagtaactcactgaagtgtgacggcgtggatcactgtgg tgataactcagatgaatctaaacctgattgtacaggagtatgtagtgcaggtggccattataactgtgataacctacgat gtatcagtaactcactgaagtgtgacggcgtggatcactgtggtgataactcagatgaatctaaacctgattgtacagga ggtgatggatctgggtacacagtgtcaagtccgtaccatctgacagtcagtgttattatacccatggttatttctgtatt tacatcatgtacatttgtgtgtgatggatctgggtacacagtatcaagtccgtaccatctgacagtcagtgttattatac ccatggttatttcggtattcctactcgttgttctgatcatacttttcgttatgatccgtcgatgtcgtcaggagagacag agagagatgatgcagaacagaagcattcctagcgttagtggacgtgtttccaggggcaggagcaggggaagagggcgtaa cagagaatttgtgagaccagctgattatccacccacgtacgaagaagccttggtaacgggtacaccttgtcctgatgact cgtatatgggattttggcagtctgcagatggtgaaatacctaaacctcccacatatgaagaagccattacctcatcacct caaccgcttggcttatctccaaacctcccctcttcaacatcatcttcggaatcaggacctagcaacaggtaccatggcaa cggttaccatggaagcagttaccatggcaacatgtctgtatcatccccagatagcagtagtagtgaggctgcaccaagac cagttctccattctcacagtatgtcgtatagttctgattcctcggcagacgtcagtccggatgaaaggagatttatgcag aggaatgtgattggacaaattgcaaatcttccaatacaggaatctgaagttctcagatcttcaactgcaggcgctgatgc tcctctaagcggcccctcacaacaagatgccccggaggtccnggaggtaactataccaaaaactgaaaatgaagctaaac cggctgaagatgttacaggagttgcattaggtagacagcaaagtcccccttcggcaaggtcaaggtcaaatgaactattg tttgatgagagacattttgataatggaagccgcagtgatggaggttattataatcctggatttaggcacagcattaatct tgagcctgatattccggtacctagaaatattagtcactccagtggtgctatggcttcaagccttggaaacctccatgagc ctggggattacccgaatctgaatagctcaccaaccaggagagtaacgcgatcgcttcaacagctaccaacatctcaagaa agtctaccctcgcctcagcgtggaagatcaaacaatgccgtaagacaggaacgtccattatccatgtccgttgacaatct tgataggtccccaaggagacaacctttcacccagatacgtgaggatcaaaggtcaaggtcatgtgctgacagagatcaga tgattggccgggaagaaagacgagggcggagatccagtgctgaaaacttgccgaactcggctgatataatgcaaccaggc ttcttaaatgtacttactgacaaaatagatgaagatgtgtatgtgtag |
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Protein
| Protein ID | pfu_aug2.0_1668.1_28451.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1668.1_28451.t1 MSRHSSIILITVLATLIGRIQTQSANTNSTQIDICKTQNIKDYQIGYTGYVGIKTNSPSNGIKPCILRIESCASCYLRLQ PSGYDWHLGSSTDGLDKLATTECITGRSYLFAFDGHYMEETLKFYTSSGIDGFSHPLNTTSSILYVAYCGTPVDISLKYQ VLFKKKTIVSGSGTIKSPFFPLSYVQNGEQFIYEFRSMEGKYITLTFEDWDLKPASEIYFESSNIQSPVSYMDDRPIVQS NGPYMTAVFSTGSNLIGGGERKYLGFKFSYRFHENKQDLQDLPSTSDCGGYIWNSVGGTFEFNKHYIFSGTKHDCVWVVQ KKQGYDNVYLKLLTFTGHFGSSVEVRDGLTSDGTLLNTIYNNMTRYRAFTSTVGFYVRLQGHFSREDYTRMSYASYSKVC SAGGHYNCDNLRCISNSLKCDGVDHCGDNSDESKPDCTGVCSAGGHYNCDNLRCISNSLKCDGVDHCGDNSDESKPDCTG GDGSGYTVSSPYHLTVSVIIPMVISVFTSCTFVCDGSGYTVSSPYHLTVSVIIPMVISVFLLVVLIILFVMIRRCRQERQ REMMQNRSIPSVSGRVSRGRSRGRGRNREFVRPADYPPTYEEALVTGTPCPDDSYMGFWQSADGEIPKPPTYEEAITSSP QPLGLSPNLPSSTSSSESGPSNRYHGNGYHGSSYHGNMSVSSPDSSSSEAAPRPVLHSHSMSYSSDSSADVSPDERRFMQ RNVIGQIANLPIQESEVLRSSTAGADAPLSGPSQQDAPEVXEVTIPKTENEAKPAEDVTGVALGRQQSPPSARSRSNELL FDERHFDNGSRSDGGYYNPGFRHSINLEPDIPVPRNISHSSGAMASSLGNLHEPGDYPNLNSSPTRRVTRSLQQLPTSQE SLPSPQRGRSNNAVRQERPLSMSVDNLDRSPRRQPFTQIREDQRSRSCADRDQMIGREERRGRRSSAENLPNSADIMQPG FLNVLTDKIDEDVYV |
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