Gene
| Gene Model ID | pfu_aug2.0_167.1_23594 |
|---|---|
| Locus | scaffold167.1 : 174206 ... 180570 : + |
| To GenomeBrowser | scaffold167.1:174206..180570 |
| Genes list of scaffold | scaffold167.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_167.1_23594.t1 | 1 | 1 | LSM | 17 | 50 | 8.1e-08 | 31.7 | 1.2e-11 | 9.1e-08 | 31.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_167.1_23594.t1 | gi|524878159|ref|XP_005095769.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform X2 [Aplysia californica] | 8.0e-27 |
| pfu_aug2.0_167.1_23594.t1 | gi|524878157|ref|XP_005095768.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform X1 [Aplysia californica] | 1.0e-25 |
| pfu_aug2.0_167.1_23594.t1 | gi|638249712|ref|NP_001279176.1| | LSM5 homolog, U6 small nuclear RNA associated [Callorhinchus milii] | 2.0e-24 |
| pfu_aug2.0_167.1_23594.t1 | gi|527246764|ref|XP_005141714.1| | PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Melopsittacus undulatus] | 1.0e-23 |
| pfu_aug2.0_167.1_23594.t1 | gi|154426284|ref|NP_001093908.1| | U6 snRNA-associated Sm-like protein LSm5 [Danio rerio] | 1.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_167.1_23594.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_167.1_23594.t1 atgacaactactttttcaaacccatctcagttgttacccctagagctggttgacaagtgtatcggttcacgaatccacat catcatgaagaacgacaaggagatcgtaggagttctactcggctttgatgactatgtcagtatccttttgattaatgaga atatagaagaacttgtccctggtggtgaaggaccggaaatctga |
|
Protein
| Protein ID | pfu_aug2.0_167.1_23594.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_167.1_23594.t1 MTTTFSNPSQLLPLELVDKCIGSRIHIIMKNDKEIVGVLLGFDDYVSILLINENIEELVPGGEGPEI |
|