Gene
| Gene Model ID | pfu_aug2.0_1670.1_01762 |
|---|---|
| Locus | scaffold1670.1 : 71967 ... 87915 : - |
| To GenomeBrowser | scaffold1670.1:71967..87915 |
| Genes list of scaffold | scaffold1670.1 |
| Synonym | pfu_aug1.0_16293.1_32676 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| basement membrane-specific heparan sulfate proteoglycan core protein | GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1670.1_01762.t1 | 8 | 1 | I-set | 22 | 104 | 0.0 | 170.0 | 1.3e-05 | 0.024 | 14.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 1 | V-set | 29 | 104 | 3.0e-27 | 94.7 | 9.2e-08 | 0.00017 | 21.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 1 | Ig_3 | 45 | 103 | 0.0 | 162.1 | 1.1e-06 | 0.002 | 18.5 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 1 | ig | 76 | 104 | 4.6e-27 | 93.9 | 0.00019 | 0.36 | 10.9 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 1 | Ig_2 | 83 | 120 | 0.0 | 192.2 | 0.00028 | 0.52 | 10.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 2 | Ig_3 | 137 | 178 | 0.0 | 162.1 | 0.052 | 96.0 | 3.6 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 2 | Ig_2 | 138 | 200 | 0.0 | 192.2 | 3.5e-05 | 0.066 | 13.3 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 2 | ig | 138 | 179 | 4.6e-27 | 93.9 | 0.031 | 58.0 | 3.9 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 2 | I-set | 167 | 179 | 0.0 | 170.0 | 0.13 | 250.0 | 1.6 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 2 | V-set | 167 | 181 | 3.0e-27 | 94.7 | 0.28 | 520.0 | 0.5 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 3 | Ig_3 | 204 | 276 | 0.0 | 162.1 | 4.2e-10 | 7.7e-07 | 29.5 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 3 | I-set | 207 | 282 | 0.0 | 170.0 | 4.0e-07 | 0.00074 | 19.3 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 3 | V-set | 211 | 271 | 3.0e-27 | 94.7 | 1.1e-06 | 0.0021 | 17.9 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 3 | Ig_2 | 216 | 276 | 0.0 | 192.2 | 1.1e-09 | 2.0e-06 | 27.8 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 3 | ig | 219 | 273 | 4.6e-27 | 93.9 | 1.8e-05 | 0.033 | 14.3 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 4 | Ig_3 | 293 | 361 | 0.0 | 162.1 | 2.7e-09 | 5.0e-06 | 26.9 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 4 | Ig_2 | 295 | 367 | 0.0 | 192.2 | 2.7e-07 | 0.00049 | 20.1 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 4 | I-set | 300 | 364 | 0.0 | 170.0 | 2.1e-07 | 0.00039 | 20.2 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 4 | ig | 307 | 361 | 4.6e-27 | 93.9 | 0.00033 | 0.62 | 10.2 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 4 | V-set | 324 | 368 | 3.0e-27 | 94.7 | 7.8e-06 | 0.014 | 15.2 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 5 | Ig_2 | 412 | 472 | 0.0 | 192.2 | 0.00027 | 0.51 | 10.5 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 5 | Ig_3 | 413 | 459 | 0.0 | 162.1 | 3.5e-08 | 6.4e-05 | 23.3 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 5 | ig | 428 | 456 | 4.6e-27 | 93.9 | 0.0024 | 4.4 | 7.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 5 | I-set | 436 | 462 | 0.0 | 170.0 | 0.00028 | 0.52 | 10.1 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 5 | V-set | 437 | 460 | 3.0e-27 | 94.7 | 0.036 | 66.0 | 3.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 6 | Ig_3 | 483 | 553 | 0.0 | 162.1 | 4.7e-09 | 8.8e-06 | 26.1 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 6 | V-set | 485 | 567 | 3.0e-27 | 94.7 | 1.9e-08 | 3.6e-05 | 23.6 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 6 | I-set | 489 | 567 | 0.0 | 170.0 | 3.1e-14 | 5.8e-11 | 42.1 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 6 | Ig_2 | 493 | 567 | 0.0 | 192.2 | 3.9e-15 | 7.2e-12 | 45.2 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 6 | ig | 496 | 551 | 4.6e-27 | 93.9 | 5.8e-07 | 0.0011 | 19.0 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 7 | Ig_3 | 577 | 641 | 0.0 | 162.1 | 2.0e-07 | 0.00038 | 20.9 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 7 | Ig_2 | 585 | 654 | 0.0 | 192.2 | 3.4e-05 | 0.063 | 13.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 7 | ig | 591 | 639 | 4.6e-27 | 93.9 | 0.00048 | 0.9 | 9.7 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 7 | I-set | 594 | 651 | 0.0 | 170.0 | 0.00089 | 1.6 | 8.5 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 7 | V-set | 631 | 642 | 3.0e-27 | 94.7 | 0.41 | 760.0 | 0.0 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 8 | Ig_2 | 671 | 746 | 0.0 | 192.2 | 4.0e-20 | 7.4e-17 | 61.2 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 8 | I-set | 673 | 736 | 0.0 | 170.0 | 3.9e-17 | 7.2e-14 | 51.4 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 8 | Ig_3 | 674 | 732 | 0.0 | 162.1 | 2.8e-13 | 5.1e-10 | 39.7 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 8 | V-set | 675 | 733 | 3.0e-27 | 94.7 | 9.3e-06 | 0.017 | 14.9 |
| pfu_aug2.0_1670.1_01762.t1 | 8 | 8 | ig | 678 | 730 | 4.6e-27 | 93.9 | 8.0e-11 | 1.5e-07 | 31.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1670.1_01762.t1 | gi|507937052|ref|XP_004679429.1| | 1.99993e-41 | |
| pfu_aug2.0_1670.1_01762.t1 | gi|524906537|ref|XP_005108559.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Aplysia californica] | 3.00004e-41 |
| pfu_aug2.0_1670.1_01762.t1 | gi|635110854|ref|XP_007978319.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein isoform X7 [Chlorocebus sabaeus] | 2.0e-40 |
| pfu_aug2.0_1670.1_01762.t1 | gi|554529939|ref|XP_005859769.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein [Myotis brandtii] | 5.0e-40 |
| pfu_aug2.0_1670.1_01762.t1 | gi|532064511|ref|XP_005318121.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein [Ictidomys tridecemlineatus] | 7.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_1670.1_01762.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1670.1_01762.t1 atgttgatggttctttttacaattggactttgtcttatttttatagtttccactagtggaaattttatcaggaccccaaa agacgtgacgtcttgttcaggaaatgacatcatactagactggctgttttccggatcaccatctgttgtcacgtgggagc tgttgccggatacccagattatgtcctacgtttcaattattggtcttgcaactccgaacgaaaattaccaaggtcgaatc tctcataacggaaacggaagtataactctaaaaggtgttactgaatctgagtctggcacgtatcagtgtagtccggttta tatcctgtcagctccaaaagaccaagtggaagttatagtatacaatagaatgaaggtcgctccggatattgagtataacg tcacaacgaacaagttgtcatgtaatgtacttggagtgtcgataggagtttctttcaagtggacgtattcagggaacgag ataggatctagaaatataataacaccaacacaatcaggagagtatacctgcagtgtagctggagacgccatagtcttgtg taaaggagagggtgttataacttcagcaactctatcagttcatctagagaaacccgtcgtttcgattgaccatcagatct ttaacacggcagaagggcaaagtataacactccagtgtaatctggaaagggcttctcctgagatcatactagaatggcga tggtacaagttaggacatgaagaaaatatattgtccaaaacaccttcatttaccattgattacatttcacctgcgcatgc aggaaattactcctgcatcgctcggaatattatcggagaatctgacccggctgtgacaactttaaacatctttgtacctc cagtgatttctctgatagaaaacaaaacccctatagagggttcttcattgacaatgctctgcaacattacttcaaatcca gtaccttctaacaatcaagtgttttggacaaaagtagacgagatgtcgttcaaagtaattggaagtactctatcgcttca aaacataaaccgtcaagataccgggatatactcttgcaatgtgaatgtttcaatggtgttaaattctggacaatggatat ctaaatcagccacggaaaatgtacgaattgacgtcttatatggtccaggtgattccatgaaaatttcgcccgactccgat gtaacgtattactatgaaaatggtaggacaaaccctgtcgtttgtagtgctatctgtaaccctacatgcaggatatactg gaaagatccctatggaaacacattagatgggaatactttgagacttggcaatgcctcaagaagcatgaatggaacataca cctgtatagctgaaaatgttatcacttctttatcctattcatcaaatacatccattgtaattatagtctattatactacg tcaatcatatcaacgattccacaaggatcaatattggttcaagaaggaaatgatatcctgttagaatgtaaaacagatgg gtatcccatttcaactctgatatggaagaaagataaagaaatattcgacagaactgatgtaataaacaatgacgaaggct tgtatttctcaaatgtgaatagatctgacgctggtcaatacacatgtgaagctacaaatggaataggaagtaccaaaaca gctgaatttaaccttattgtccagtatcccccaggaacatctatcagtttaacaggttcttctcgtaccatcaatataat cgaaggaaatgacttagcggatattacctgcaatgcgcagtgtgttccagaatgcagctataattggatatatcccaatg gctcttccgtccccggtagagtacttagactcaacaaggcagctcgacacatgaatggaacatatttttgctatgcgcaa aatgaaatagcatccgagaaacattcttcgcgtatcgacgtcgctgtcatcgttttctatccttgtgagatagaaagatg gtttgtgagaagtactcacaacgtagatgttggtgctgatgtcactataaactgtcatatcgagggaaaccctgaaccac taatcacttggtcaaaagatggcaaaaacataaatattgatacgagtgaaaagtatctccaattaaggaatgtgtcctgt gaagacagcggggagtacacatgcactgctgacaacaatattggtcaacccgtgtctcaaccattcaatgtatctgtatt atgtaaaactacagaagatacagaaatagaaaaatctgaaagaaatgaaagtcttgacgacgatactatcatatttgctg cagtcggtgccggatcaggttttctacttattctcataatattcgtcatctttgctgctatgaaatgtagaagtaaaaag gaagatcctcacggcacagcacaagagacaacacaagtggcagaaaaccaatctattcatcatatttatgacacaataca agatcaaccagatgttgctgtaaatccttatagcgttggctatgtaaggtattatccggataacagttcttcaagggata gtcacagtacaacatctggagacggttccaatagtagttatttgtccatcttacccatgtga |
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Protein
| Protein ID | pfu_aug2.0_1670.1_01762.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1670.1_01762.t1 MLMVLFTIGLCLIFIVSTSGNFIRTPKDVTSCSGNDIILDWLFSGSPSVVTWELLPDTQIMSYVSIIGLATPNENYQGRI SHNGNGSITLKGVTESESGTYQCSPVYILSAPKDQVEVIVYNRMKVAPDIEYNVTTNKLSCNVLGVSIGVSFKWTYSGNE IGSRNIITPTQSGEYTCSVAGDAIVLCKGEGVITSATLSVHLEKPVVSIDHQIFNTAEGQSITLQCNLERASPEIILEWR WYKLGHEENILSKTPSFTIDYISPAHAGNYSCIARNIIGESDPAVTTLNIFVPPVISLIENKTPIEGSSLTMLCNITSNP VPSNNQVFWTKVDEMSFKVIGSTLSLQNINRQDTGIYSCNVNVSMVLNSGQWISKSATENVRIDVLYGPGDSMKISPDSD VTYYYENGRTNPVVCSAICNPTCRIYWKDPYGNTLDGNTLRLGNASRSMNGTYTCIAENVITSLSYSSNTSIVIIVYYTT SIISTIPQGSILVQEGNDILLECKTDGYPISTLIWKKDKEIFDRTDVINNDEGLYFSNVNRSDAGQYTCEATNGIGSTKT AEFNLIVQYPPGTSISLTGSSRTINIIEGNDLADITCNAQCVPECSYNWIYPNGSSVPGRVLRLNKAARHMNGTYFCYAQ NEIASEKHSSRIDVAVIVFYPCEIERWFVRSTHNVDVGADVTINCHIEGNPEPLITWSKDGKNINIDTSEKYLQLRNVSC EDSGEYTCTADNNIGQPVSQPFNVSVLCKTTEDTEIEKSERNESLDDDTIIFAAVGAGSGFLLILIIFVIFAAMKCRSKK EDPHGTAQETTQVAENQSIHHIYDTIQDQPDVAVNPYSVGYVRYYPDNSSSRDSHSTTSGDGSNSSYLSILPM |
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