Gene
| Gene Model ID | pfu_aug2.0_1670.1_01763 |
|---|---|
| Locus | scaffold1670.1 : 89342 ... 107495 : - |
| To GenomeBrowser | scaffold1670.1:89342..107495 |
| Genes list of scaffold | scaffold1670.1 |
| Synonym | pfu_aug1.0_59383.1_41714 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1670.1_01763.t1 | 2 | 1 | VWA_3 | 215 | 369 | 1.3e-14 | 54.1 | 2.0e-14 | 5.9e-11 | 42.2 |
| pfu_aug2.0_1670.1_01763.t1 | 2 | 1 | VWA | 216 | 384 | 1.79997e-41 | 141.8 | 7.9e-31 | 2.3e-27 | 95.8 |
| pfu_aug2.0_1670.1_01763.t1 | 2 | 1 | VWA_2 | 216 | 371 | 2.6e-19 | 69.9 | 1.4e-17 | 4.1e-14 | 53.0 |
| pfu_aug2.0_1670.1_01763.t1 | 2 | 2 | VWA | 409 | 567 | 1.79997e-41 | 141.8 | 6.3e-17 | 1.9e-13 | 50.5 |
| pfu_aug2.0_1670.1_01763.t1 | 2 | 2 | VWA_2 | 409 | 561 | 2.6e-19 | 69.9 | 5.3e-07 | 0.0016 | 18.5 |
| pfu_aug2.0_1670.1_01763.t1 | 2 | 2 | VWA_3 | 478 | 563 | 1.3e-14 | 54.1 | 0.00019 | 0.55 | 9.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1670.1_01763.t1 | gi|548539520|ref|XP_005752897.1| | PREDICTED: matrilin-4-like [Pundamilia nyererei] | 2.0e-19 |
| pfu_aug2.0_1670.1_01763.t1 | gi|548433160|ref|XP_005744247.1| | PREDICTED: collagen alpha-4(VI) chain-like [Pundamilia nyererei] | 2.0e-18 |
| pfu_aug2.0_1670.1_01763.t1 | gi|554851523|ref|XP_005936009.1| | PREDICTED: collagen alpha-6(VI) chain-like [Haplochromis burtoni] | 3.0e-18 |
| pfu_aug2.0_1670.1_01763.t1 | gi|499043237|ref|XP_004572221.1| | 4.0e-18 | |
| pfu_aug2.0_1670.1_01763.t1 | gi|657584108|ref|XP_008296193.1| | PREDICTED: collagen alpha-6(VI) chain isoform X3 [Stegastes partitus] | 4.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_1670.1_01763.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1670.1_01763.t1 atgaccttatccctgtttacagcacaaaatcgacaattcagaaaatcagaaaccgaaggcatacaaaatcaggataaaac aggaaccaaagcaaacaaacaaaaacctccaccatatgaaaagaagcgaactcccgatatgggaatacttaaaacgtgga tagctatcggtcttttcttagtacagtattctcatcaataccaatcagcaaaagaagtgtacaagtctcgagatattcat acgtttgatccagttatccataaagtgaaaatttcaaaggacgaggcattttcctttcttgagtcatcaattaggagatt taaacgatcagatgaaagatgcaacattaatgaaccatattgtgaacagcataaagaaagctgtatgcttcagaatgaaa actcaagagaatatttctgctcgcttccaaataaaaatccaaattgtgcagccggacagacatgctatctttcgactcca tgtcctgctcattacacgctgggctgctcggacaacccatgtgatggaattccctgtcaaaaccttggaacatgtacgca gactcttacgggatatagatgcgattgttttcttggatttgatgaacagaataactgtgaaatagattgtgttccaggac cagctgacgttgtcttcctactcgacacctcagagagtgacattcgaaattttaacaaaacacgtgatgctgtatcaaac attgtgcaaagacttccagtaaatgaaacagaatttagaattgcagcgctgtcatactcaacacagacaactgttgaatt cttctttgacgagcacatgacaaatgagtctgtttgtgcggcgattgatgcaatacaaccaaagtcgggagcaacgctta caacaaaagcactcgaaagagcagaggagatgctgaaagataatagcaccgggtcacgtcatttgaaagcttatcaatac attatcatcgtcagtgacggtttgtccacggaccgccatgtagctatttctaaggcggtcagtatagcctctaggggtat aaatgtgtatgtactgggagtggacagagagagtgatcacacggagttcgtacaattggcatctgaaacaagtgttagca ccaaaggagtattttctactttgaatgacgatctattacatactctgtatttggaaactatcaaccataattgcaaagaa acctgtatggaaaattcaacttcagacataatgttggtaatggacctatctcggatctctcagtctgtggcagatattca actgtccctaaagtctgtaatagagcttgttacaacactagatacacggaataacaacatttctctagggctcatgtcct ttggtaacacatcaagcatagaagttccgatcagaggaattccagatgcagataaatttatctctgcatcacaggctttg aaattgaaaaatgaagaaagcaatataatatctgctttaaatcatctcaccctatccgatgcattttcagctccaaatgg cgctcgagttgattcgagaaagcttgcaataatattttctaccggaaattggacaaacattccagaagtgacaaagagaa tgatagaaattgaggctactggaattagttttatatttgtagctattggagaagatgccaattttgatatattgactgaa attagtcgagacgaccataatatatactggactgaagaaaacagttcttatgatgtcagtggagggcaagctagatgtca gctttctgggcttagcataataagtgcacaaatggacaatgaaatgttggaccatgcctga |
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Protein
| Protein ID | pfu_aug2.0_1670.1_01763.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1670.1_01763.t1 MTLSLFTAQNRQFRKSETEGIQNQDKTGTKANKQKPPPYEKKRTPDMGILKTWIAIGLFLVQYSHQYQSAKEVYKSRDIH TFDPVIHKVKISKDEAFSFLESSIRRFKRSDERCNINEPYCEQHKESCMLQNENSREYFCSLPNKNPNCAAGQTCYLSTP CPAHYTLGCSDNPCDGIPCQNLGTCTQTLTGYRCDCFLGFDEQNNCEIDCVPGPADVVFLLDTSESDIRNFNKTRDAVSN IVQRLPVNETEFRIAALSYSTQTTVEFFFDEHMTNESVCAAIDAIQPKSGATLTTKALERAEEMLKDNSTGSRHLKAYQY IIIVSDGLSTDRHVAISKAVSIASRGINVYVLGVDRESDHTEFVQLASETSVSTKGVFSTLNDDLLHTLYLETINHNCKE TCMENSTSDIMLVMDLSRISQSVADIQLSLKSVIELVTTLDTRNNNISLGLMSFGNTSSIEVPIRGIPDADKFISASQAL KLKNEESNIISALNHLTLSDAFSAPNGARVDSRKLAIIFSTGNWTNIPEVTKRMIEIEATGISFIFVAIGEDANFDILTE ISRDDHNIYWTEENSSYDVSGGQARCQLSGLSIISAQMDNEMLDHA |
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