Gene
| Gene Model ID | pfu_aug2.0_1674.1_15187 |
|---|---|
| Locus | scaffold1674.1 : 52603 ... 61675 : - |
| To GenomeBrowser | scaffold1674.1:52603..61675 |
| Genes list of scaffold | scaffold1674.1 |
| Synonym | pfu_aug1.0_614.1_22228 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1674.1_15187.t1 | 3 | 1 | Ldl_recept_a | 34 | 66 | 2.8e-17 | 62.2 | 1.3e-12 | 9.3e-09 | 35.0 |
| pfu_aug2.0_1674.1_15187.t1 | 3 | 2 | Ldl_recept_a | 78 | 110 | 2.8e-17 | 62.2 | 1.9e-12 | 1.4e-08 | 34.4 |
| pfu_aug2.0_1674.1_15187.t1 | 3 | 3 | Ldl_recept_a | 179 | 184 | 2.8e-17 | 62.2 | 0.84 | 6200.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1674.1_15187.t1 | gi|196008921|ref|XP_002114326.1| | hypothetical protein TRIADDRAFT_27379 [Trichoplax adhaerens] | 5.0e-15 |
| pfu_aug2.0_1674.1_15187.t1 | gi|734630296|ref|XP_010743482.1| | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Larimichthys crocea] | 6.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_1674.1_15187.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1674.1_15187.t1 atggcgcttcgaatacgttcatgtattcatacatactcctttaactttggaccgccatatctttcagcgtacagaattcc atgtaatactgtgagcggaaaggagggatttctatgtgaaaatggggagtgcacgctgaagtattggttctgtgatggat cagacgattgtactgacggatccgatgaggaattatgcacgtaccgaattccatgtaatactgtgagcggaaaggaggga tttctatgtgacaatggggagtgcacgctgaagtattggttctgtgatggatcagacgattgtactgacggatctgatga ggaattatgcaattcaacaattttggatcaaggtataagcgatgttgtaagtaaacaacttctcgctgctacctgtaacc actgggtgtactaccaatgcggctttaaatatccgtctgactttgtacgtggtaaaacgtgggatgaagtcaacggatat gtctggacctcggaagatgttgacaatatttgcagtgaagttgcggccacattacaatgtatcaagcagcatgtacctca gtgttttggttttgaggaaggagtggtcttctatgaccatgtctacaatatcctgtgtcaacagcctaatattacatttg ttaaagccacccttccttgtttcaatgacgcttcaacacaaattgccattaggtactacacaaacttggctcgaaaatgg aatttctatggaccaggcagtaaatctgaacgaaaggaggaagtaaaaaatagactgtgttcaaagaatgtcaacgtcat agagagacttattcgaagaatcatagatcagaactgtcgcgtcagcatttggacgaacctcattacaaaaggcttagcgt acagaataaaggaacccataatacggaaatacggagatatggaaggaccattttgcaatatgagagtcatcgtagatgaa cacctgtgggacgagtatgttaacccagtattgaaactcacggacgaacaaaggagaaagcttcagaggggtcaactact ataa |
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Protein
| Protein ID | pfu_aug2.0_1674.1_15187.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1674.1_15187.t1 MALRIRSCIHTYSFNFGPPYLSAYRIPCNTVSGKEGFLCENGECTLKYWFCDGSDDCTDGSDEELCTYRIPCNTVSGKEG FLCDNGECTLKYWFCDGSDDCTDGSDEELCNSTILDQGISDVVSKQLLAATCNHWVYYQCGFKYPSDFVRGKTWDEVNGY VWTSEDVDNICSEVAATLQCIKQHVPQCFGFEEGVVFYDHVYNILCQQPNITFVKATLPCFNDASTQIAIRYYTNLARKW NFYGPGSKSERKEEVKNRLCSKNVNVIERLIRRIIDQNCRVSIWTNLITKGLAYRIKEPIIRKYGDMEGPFCNMRVIVDE HLWDEYVNPVLKLTDEQRRKLQRGQLL |
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