Gene
| Gene Model ID | pfu_aug2.0_1678.1_28459 |
|---|---|
| Locus | scaffold1678.1 : 75973 ... 107205 : - |
| To GenomeBrowser | scaffold1678.1:75973..107205 |
| Genes list of scaffold | scaffold1678.1 |
| Synonym | pfu_aug1.0_9.1_43392 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1678.1_28459.t1 | 2 | 1 | RhoGEF | 8 | 118 | 2.9e-22 | 79.4 | 2.8e-24 | 3.0e-21 | 76.1 |
| pfu_aug2.0_1678.1_28459.t1 | 2 | 2 | RhoGEF | 235 | 263 | 2.9e-22 | 79.4 | 0.17 | 180.0 | 1.9 |
| pfu_aug2.0_1678.1_28459.t1 | 1 | 1 | I-set | 585 | 676 | 6.9e-16 | 57.8 | 1.3e-18 | 1.3e-15 | 56.9 |
| pfu_aug2.0_1678.1_28459.t1 | 1 | 1 | Ig_3 | 587 | 663 | 1.3e-06 | 28.7 | 4.1e-09 | 4.3e-06 | 27.1 |
| pfu_aug2.0_1678.1_28459.t1 | 1 | 1 | Ig_2 | 588 | 668 | 1.3e-07 | 31.6 | 3.1e-10 | 3.3e-07 | 30.3 |
| pfu_aug2.0_1678.1_28459.t1 | 1 | 1 | fn3 | 682 | 766 | 1.0e-12 | 48.0 | 2.3e-15 | 2.5e-12 | 46.7 |
| pfu_aug2.0_1678.1_28459.t1 | 1 | 1 | Pkinase | 778 | 1024 | 0.0 | 180.3 | 0.0 | 0.0 | 179.4 |
| pfu_aug2.0_1678.1_28459.t1 | 1 | 1 | Pkinase_Tyr | 778 | 1021 | 4.7e-23 | 81.5 | 7.5e-26 | 7.9e-23 | 80.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1678.1_28459.t1 | gi|260807629|ref|XP_002598611.1| | hypothetical protein BRAFLDRAFT_67006 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1678.1_28459.t1 | gi|524897588|ref|XP_005105254.1| | PREDICTED: kalirin-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1678.1_28459.t1 | gi|723134822|ref|XP_010284002.1| | PREDICTED: kalirin-like, partial [Phaethon lepturus] | 0.0 |
| pfu_aug2.0_1678.1_28459.t1 | gi|632945577|ref|XP_007888135.1| | PREDICTED: kalirin [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_1678.1_28459.t1 | gi|698461244|ref|XP_009703553.1| | PREDICTED: kalirin-like, partial [Cariama cristata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1678.1_28459.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1678.1_28459.t1 atggtatggagtttctcacatgagatacagaagtgtcttgatgatgctgaaaagctaggttccctcttcacaagatgtga aagacgactgcatatgtatgtaaagtattgcgagaacaagccaaaatccgagtacattgtcgcagagaatttagattatt ttgaggagctcagacaaaaattaggtcataggttaaacctacctgacctacttattaaacctgtacagcgtattacaaaa taccaacttctgctcaaggatatactcaagtacacagatagagctggtgagaatacgaaggctctggagaaagcgttaca tgtgatgtgtgtggtaccaaaagccgctaatgacatgatgcaagtaggcaggcttcagggattcgatggtaaaataactg ctcaaggaaatctgctgttacacgacaccctgctggtagcagaggtgatgcagaataaaggcgatcaaaaattcaaggag agacgagtatttttgttcgatcagataataatcttcagtgaaatgacgcagcggaggggagacagctttacaaatgcaaa ttacgtctataaaaatagtctcaagacaaacaagatgataatgaaatgtcccctgccgaacgagccgctgaaatttatgt tgatcgataaatctccgagctccgatacacgattcatcatccaagctcagtcagaggaaatcctggagacatggacaaca aagattaagtccatactagatatgcagaatgattttattgattcccttacaaaaccacagcaacatgccaaagaatcagt ccttcttgtaagagattccacaccagacttactacccagtatgggcaaggaaccacctctcaggaaaacgtggtcgcaac cccagcccgggggaaagggaggcaactctcgtatcccaaagaaagaccatttacggagtcccagtaaagaagggcaaacc tcaaggtcgaaatcggtaccaggtcagattccaaaagttgtagaaaatgatgagcaaaggactctaaaatctgccgttct ttcagataaactcggagactcatattccgagagtgcttcagacgtaaacattagtaaatcctcgtcaaccgaagcatgtt cggattttcatagacaacactcaaattcttctattgggagtgtgtccccgaatataaaaccgaagaaaaatattctggag ggtctcaagtacaaaaaatcaaaaagtgacagtgcgactgctcctaatgatcaaagtgcaagtatgaactcgagtttagg aaatagtgaacaatttgagaatttctcaaggacttctgatcggggagaattagattctagtcagtcagaggaaacagggg ctgatcaatcatcggataacgttcatataggaaagatcctcacagattaccaggcggttaaggaggacgagatatcggtg tcacgtggtgaaatcgttcaagttctgtcatccaatcaacagaatatgttccttgtctatcgccctgcaagtgcctcatc gcccgcggccgagggctggattccaggccatgtgatagggcctaaagaggagggcaacatgaggaaactttcatggcagt tgtttaagcttaggatgcaaggtctccgaccagagaggaagatatcagaacccgccatacctgtagagaggaagtgtaag actttgccacggtcaatcagtgacttcagggaacgtgtgtcctctccacacgaccttcagtacgagatgtcaccgtccgt tcttcagccactgaccaatgtgtccgtgcaggccggagatacggccactctaacttgccggatatgtggccgacctcgac caaaactgacctggaggtttaatgacagtatccccgtcataagagggtcgcgagttgacctcaaatacgacgaagacgga tttgctgtactaaatctttatcaagtaacatcagcagacagcggggaatattcctgtttagccacaagtaacctcggatc tgtaataacgagggcccaaataacggtcctagaccgaccaggtgcgcccaggaagcccaaagtaagaaaccaggtgggaa catcggtccatctcgagtggtcacctccagcctatattacgggagacgtacaaatacaaggttataccatagagatgaga gaaatcaactctgatatgtggcaagcggctattccatacgttccaaatacgtcacaggttattggtgatctatgtccagg ttcaacttatcaattcagagtcagctcaaataatagcattggtatgagtgaaccaagtatcgaatctgacttcgtaacta ttccaactgaaacagggcgcttttctgttgtgaggaagtgtgttcagaaatgctctggacaagatgttgccgccaaatgt ttgaacaaacgtcaatttgagcgggaaatagtggagttagaattcaacacagcacagtcactacaacatcataatcttcc tcagatgtttgatttgtacgacaatgcatcaactctgattattctcatggaatatttccccatgggtcgtctctttgagt ttatatgtggacgacctacgtttgacgagctggaagcggccgactacatcagccaattgctcagtgtatctcagtatcta cacaactgtcgtatagcacatctagatattaagccagagaatttactagttgatggttccagtgtcccggtgagattaaa actgattgattttggtgatgccagacacatatataatgcccagtatgtacacaccgtgcttggtagcccagaattcctag caccggaaatagtcagcagacttcctgtcgggctcgtaacagacatctggagtattggagtgatattatatgtgttgctg agtggagtatctccgttcttggacgagagtcacgaggaaacttgtgcaaacatcgtaaataacgactactgctttccgga tcagtatttcagtggtatctcaaacgaggctcgtgacctagttagggccatgctcacaaatgaccttagtgagagaccga ctgctcagcaatgtatggagagtatctggatccaccgtgctcacactcctagatccgcctcccaccgtccaagatcaatc cctattgctaacctcagaaacttcatagagagaagaaaacaacagggtgacgcatgcgtaacaacgcctgtcacgtga |
|
Protein
| Protein ID | pfu_aug2.0_1678.1_28459.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1678.1_28459.t1 MVWSFSHEIQKCLDDAEKLGSLFTRCERRLHMYVKYCENKPKSEYIVAENLDYFEELRQKLGHRLNLPDLLIKPVQRITK YQLLLKDILKYTDRAGENTKALEKALHVMCVVPKAANDMMQVGRLQGFDGKITAQGNLLLHDTLLVAEVMQNKGDQKFKE RRVFLFDQIIIFSEMTQRRGDSFTNANYVYKNSLKTNKMIMKCPLPNEPLKFMLIDKSPSSDTRFIIQAQSEEILETWTT KIKSILDMQNDFIDSLTKPQQHAKESVLLVRDSTPDLLPSMGKEPPLRKTWSQPQPGGKGGNSRIPKKDHLRSPSKEGQT SRSKSVPGQIPKVVENDEQRTLKSAVLSDKLGDSYSESASDVNISKSSSTEACSDFHRQHSNSSIGSVSPNIKPKKNILE GLKYKKSKSDSATAPNDQSASMNSSLGNSEQFENFSRTSDRGELDSSQSEETGADQSSDNVHIGKILTDYQAVKEDEISV SRGEIVQVLSSNQQNMFLVYRPASASSPAAEGWIPGHVIGPKEEGNMRKLSWQLFKLRMQGLRPERKISEPAIPVERKCK TLPRSISDFRERVSSPHDLQYEMSPSVLQPLTNVSVQAGDTATLTCRICGRPRPKLTWRFNDSIPVIRGSRVDLKYDEDG FAVLNLYQVTSADSGEYSCLATSNLGSVITRAQITVLDRPGAPRKPKVRNQVGTSVHLEWSPPAYITGDVQIQGYTIEMR EINSDMWQAAIPYVPNTSQVIGDLCPGSTYQFRVSSNNSIGMSEPSIESDFVTIPTETGRFSVVRKCVQKCSGQDVAAKC LNKRQFEREIVELEFNTAQSLQHHNLPQMFDLYDNASTLIILMEYFPMGRLFEFICGRPTFDELEAADYISQLLSVSQYL HNCRIAHLDIKPENLLVDGSSVPVRLKLIDFGDARHIYNAQYVHTVLGSPEFLAPEIVSRLPVGLVTDIWSIGVILYVLL SGVSPFLDESHEETCANIVNNDYCFPDQYFSGISNEARDLVRAMLTNDLSERPTAQQCMESIWIHRAHTPRSASHRPRSI PIANLRNFIERRKQQGDACVTTPVT |
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