Gene
| Gene Model ID | pfu_aug2.0_1683.1_11804 |
|---|---|
| Locus | scaffold1683.1 : 40986 ... 55370 : + |
| To GenomeBrowser | scaffold1683.1:40986..55370 |
| Genes list of scaffold | scaffold1683.1 |
| Synonym | pfu_aug1.0_546.1_07554 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1683.1_11804.t1 | 3 | 1 | F-box | 276 | 319 | 1.2e-09 | 37.5 | 5.6e-13 | 1.2e-09 | 37.5 |
| pfu_aug2.0_1683.1_11804.t1 | 2 | 1 | F-box-like | 277 | 321 | 6.3e-14 | 51.4 | 3.0e-17 | 6.3e-14 | 51.4 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 1 | LRR_6 | 327 | 334 | 3.3e-10 | 38.9 | 7.0 | 15000.0 | -3.4 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 1 | LRR_4 | 368 | 376 | 2.7e-11 | 42.8 | 4.0 | 8400.0 | -3.5 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 2 | LRR_6 | 368 | 378 | 3.3e-10 | 38.9 | 1.0 | 2100.0 | -0.7 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 3 | LRR_6 | 395 | 418 | 3.3e-10 | 38.9 | 2.5e-05 | 0.054 | 13.5 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 2 | LRR_4 | 397 | 435 | 2.7e-11 | 42.8 | 0.002 | 4.2 | 7.0 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 4 | LRR_6 | 421 | 439 | 3.3e-10 | 38.9 | 0.00044 | 0.94 | 9.7 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 5 | LRR_6 | 457 | 471 | 3.3e-10 | 38.9 | 2.1 | 4500.0 | -1.7 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 3 | LRR_4 | 472 | 496 | 2.7e-11 | 42.8 | 0.0024 | 5.0 | 6.8 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 6 | LRR_6 | 473 | 496 | 3.3e-10 | 38.9 | 0.0002 | 0.43 | 10.8 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 7 | LRR_6 | 502 | 517 | 3.3e-10 | 38.9 | 0.16 | 330.0 | 1.8 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 4 | LRR_4 | 503 | 545 | 2.7e-11 | 42.8 | 5.5e-07 | 0.0012 | 18.4 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 8 | LRR_6 | 525 | 547 | 3.3e-10 | 38.9 | 0.0093 | 20.0 | 5.6 |
| pfu_aug2.0_1683.1_11804.t1 | 3 | 2 | F-box | 536 | 565 | 1.2e-09 | 37.5 | 0.96 | 2000.0 | -1.5 |
| pfu_aug2.0_1683.1_11804.t1 | 2 | 2 | F-box-like | 544 | 565 | 6.3e-14 | 51.4 | 2.9 | 6200.0 | -3.0 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 5 | LRR_4 | 550 | 574 | 2.7e-11 | 42.8 | 0.82 | 1700.0 | -1.3 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 9 | LRR_6 | 552 | 575 | 3.3e-10 | 38.9 | 0.28 | 600.0 | 1.0 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 6 | LRR_4 | 572 | 599 | 2.7e-11 | 42.8 | 0.0022 | 4.6 | 6.9 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 10 | LRR_6 | 577 | 600 | 3.3e-10 | 38.9 | 0.0032 | 6.8 | 7.0 |
| pfu_aug2.0_1683.1_11804.t1 | 7 | 7 | LRR_4 | 614 | 640 | 2.7e-11 | 42.8 | 0.018 | 38.0 | 4.0 |
| pfu_aug2.0_1683.1_11804.t1 | 3 | 3 | F-box | 614 | 636 | 1.2e-09 | 37.5 | 0.21 | 440.0 | 0.6 |
| pfu_aug2.0_1683.1_11804.t1 | 11 | 11 | LRR_6 | 629 | 640 | 3.3e-10 | 38.9 | 0.85 | 1800.0 | -0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1683.1_11804.t1 | gi|260816636|ref|XP_002603194.1| | hypothetical protein BRAFLDRAFT_93403 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1683.1_11804.t1 | gi|585682716|ref|XP_006812292.1| | PREDICTED: uncharacterized protein LOC102803243 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1683.1_11804.t1 | gi|156366986|ref|XP_001627201.1| | predicted protein [Nematostella vectensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1683.1_11804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1683.1_11804.t1 atggaggagagtaggaggtcatccagaacctctgagcctatagtaccgtcactcaacctcgtcaatagtagtgatgaaga ggctgaaaggaagaaagaaaatgctaagattttcagtatgtcagcagacagtgaggattgggaggatttctttaatccaa acatccctggaggacatcaaccagcaatagaggatcccagtcctcaggaggaaggcccacagcctttcctggaacgtgtc ttagatgacctagaaacccccgcccccaaaaaggggagtaaaggggcaaagaaagggccaaatgtcccacccatcaggaa gagtattgtaagggaatcaatagagactccaggatatcagaggaaatgggaaaaatccagctccgtatgggcatcaaggg agttaggtactcgtcccaacaaacctgtcaaagcccagcgaccagccagtgcaggaatggccaggagggtcagtagtgag gaaaacctactgaatgatcgctcaccagcaaaaagtcctgttatgtctaaaaaaccaagacctggtagtgctgatatggt taaaagaaaaactatgaggtctcagccttcagagagtggtactccggacgttactagtagcggagatctgaagaagatcg gagtcaccatgtctgtaaacttcgagaagcatgcagatcttcctcgacctgtggatcatagactacaaactgagcaagtc acagaggatacagaactaccattacctggtcctgatgctgcagcctcggcatacaataagtatcatgaaatgactcctag aatccgagttggtgagtactctatgtggctatgcctgccagatgaattactgcttcatgtattctccttcctgggccata atgacttagctagctgtgctagaacgtgtcagcagtatcatagagtggccaaggacccctctctatggaagtacattacc ctgaagaagaagcatgacctgacagatgaaggactgttacagattggtcgtcataaaccggtcagtctggcactaataca atgtcacggagaaaatataacagcaaagggactgagagagatgttcagggaatgtgcagacagtcttagggagttaaatt tttgtggatgtagtcgaggtgctctgacaggggactgtatcctccttcatgcctcagctagatgtcataaccttacacat gtggatgccagctggtgtaatgtatctgacagtggagtgggcgctatatcaaatgctgcaaatagacttgagagtttatg tataaatggctgccaactgctgtctgacgagggctttgaaactgtcattaagaagcatggaaaaagtttacgggtgatag agatgtttggatgttttaacataactcccaagggaatgagatacttggccaataactgtgtcaacttgaccacacttaat ctaggacagtgttacaagttgacagatatctgtatatcacagttgtcatccagccttgggagggtagaaaatcttgacct tcgaggatgtaaaacaattaaagataattgtatacgatatgtagtgaagaattgtccacgccttaaaacaatctcattgg ctaattgtcctaacatcagtgatgtgtctctactggaaatctctacttatctcagtgatataaggagtatagatgtatgt ggatgtcgacaggtgaccgattctagtattagagctatagctaataactgtcagaacctacgttatatagatatcagctc tacagggtgtactcatagaagtgtgtcaatgctggctaatttctgcagtcagagaattgaaaccatgaagctcaacttcc tctcagatctcagtgaaaactgtctcattaagttgctcaaacattgcaaaagattacaattgttgcatttatatggatgt accagtgttagaaacatagacaaaatacgacaagtcaaccccaacgttaaaattgaactgtga |
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Protein
| Protein ID | pfu_aug2.0_1683.1_11804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1683.1_11804.t1 MEESRRSSRTSEPIVPSLNLVNSSDEEAERKKENAKIFSMSADSEDWEDFFNPNIPGGHQPAIEDPSPQEEGPQPFLERV LDDLETPAPKKGSKGAKKGPNVPPIRKSIVRESIETPGYQRKWEKSSSVWASRELGTRPNKPVKAQRPASAGMARRVSSE ENLLNDRSPAKSPVMSKKPRPGSADMVKRKTMRSQPSESGTPDVTSSGDLKKIGVTMSVNFEKHADLPRPVDHRLQTEQV TEDTELPLPGPDAAASAYNKYHEMTPRIRVGEYSMWLCLPDELLLHVFSFLGHNDLASCARTCQQYHRVAKDPSLWKYIT LKKKHDLTDEGLLQIGRHKPVSLALIQCHGENITAKGLREMFRECADSLRELNFCGCSRGALTGDCILLHASARCHNLTH VDASWCNVSDSGVGAISNAANRLESLCINGCQLLSDEGFETVIKKHGKSLRVIEMFGCFNITPKGMRYLANNCVNLTTLN LGQCYKLTDICISQLSSSLGRVENLDLRGCKTIKDNCIRYVVKNCPRLKTISLANCPNISDVSLLEISTYLSDIRSIDVC GCRQVTDSSIRAIANNCQNLRYIDISSTGCTHRSVSMLANFCSQRIETMKLNFLSDLSENCLIKLLKHCKRLQLLHLYGC TSVRNIDKIRQVNPNVKIEL |
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