Gene
| Gene Model ID | pfu_aug2.0_170.1_00356 |
|---|---|
| Locus | scaffold170.1 : 50736 ... 75020 : + |
| To GenomeBrowser | scaffold170.1:50736..75020 |
| Genes list of scaffold | scaffold170.1 |
| Synonym | pfu_aug1.0_2301.1_44329 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| endoribonuclease dicer | GO:0000122 GO:0000166 GO:0000212 GO:0001525 GO:0001932 GO:0003725 GO:0004525 GO:0004530 GO:0005515 GO:0005634 GO:0005793 GO:0006309 GO:0008593 GO:0009791 GO:0010070 GO:0010626 GO:0010660 GO:0014040 GO:0014835 GO:0016442 GO:0019827 GO:0021522 GO:0021675 GO:0021889 GO:0021987 GO:0030324 GO:0030423 GO:0030424 GO:0030425 GO:0030426 GO:0031054 GO:0031069 GO:0031643 GO:0032290 GO:0033168 GO:0035068 GO:0035116 GO:0035198 GO:0035264 GO:0035280 GO:0043167 GO:0045069 GO:0045664 GO:0045944 GO:0048255 GO:0048536 GO:0048608 GO:0048713 GO:0048754 GO:0048812 GO:0051216 GO:0051225 GO:0051607 GO:0051726 GO:0055013 GO:0060119 GO:0060576 GO:0061309 GO:0061548 GO:0070173 GO:0070578 GO:0070883 GO:0071335 GO:0090502 GO:2000630 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_170.1_00356.t1 | 1 | 1 | Helicase_C | 330 | 385 | 2.3e-15 | 56.2 | 2.1e-18 | 5.2e-15 | 55.0 |
| pfu_aug2.0_170.1_00356.t1 | 2 | 1 | Dicer_dimer | 460 | 551 | 1.2e-28 | 98.6 | 2.4e-31 | 5.9e-28 | 96.4 |
| pfu_aug2.0_170.1_00356.t1 | 4 | 1 | Ribonuclease_3 | 597 | 649 | 0.0 | 183.2 | 3.7 | 9200.0 | -3.0 |
| pfu_aug2.0_170.1_00356.t1 | 1 | 1 | PAZ | 622 | 788 | 6.1e-30 | 103.2 | 5.4e-33 | 1.3e-29 | 102.1 |
| pfu_aug2.0_170.1_00356.t1 | 4 | 2 | Ribonuclease_3 | 1150 | 1161 | 0.0 | 183.2 | 0.042 | 100.0 | 3.3 |
| pfu_aug2.0_170.1_00356.t1 | 3 | 1 | Ribonucleas_3_3 | 1150 | 1182 | 5.1e-24 | 84.6 | 0.19 | 470.0 | 0.7 |
| pfu_aug2.0_170.1_00356.t1 | 4 | 3 | Ribonuclease_3 | 1230 | 1331 | 0.0 | 183.2 | 6.3e-30 | 1.5e-26 | 93.0 |
| pfu_aug2.0_170.1_00356.t1 | 3 | 2 | Ribonucleas_3_3 | 1230 | 1288 | 5.1e-24 | 84.6 | 1.2e-06 | 0.0029 | 17.5 |
| pfu_aug2.0_170.1_00356.t1 | 3 | 3 | Ribonucleas_3_3 | 1419 | 1560 | 5.1e-24 | 84.6 | 2.0e-19 | 4.8e-16 | 58.8 |
| pfu_aug2.0_170.1_00356.t1 | 4 | 4 | Ribonuclease_3 | 1439 | 1559 | 0.0 | 183.2 | 3.5e-26 | 8.7e-23 | 80.9 |
| pfu_aug2.0_170.1_00356.t1 | 2 | 2 | Dicer_dimer | 1594 | 1628 | 1.2e-28 | 98.6 | 1.1 | 2600.0 | -1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_170.1_00356.t1 | gi|676431719|ref|XP_009046342.1| | hypothetical protein LOTGIDRAFT_111015 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_170.1_00356.t1 | gi|524899606|ref|XP_005106232.1| | PREDICTED: endoribonuclease Dicer-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_170.1_00356.t1 | gi|641675361|ref|XP_008187012.1| | PREDICTED: endoribonuclease Dcr-1-like, partial [Acyrthosiphon pisum] | 0.0 |
| pfu_aug2.0_170.1_00356.t1 | gi|19072784|gb|AAL84637.1|AF484523_1 | endoribonuclease Dicer [Mus musculus] | 0.0 |
| pfu_aug2.0_170.1_00356.t1 | gi|260831340|ref|XP_002610617.1| | hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_170.1_00356.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00356.t1 atggtgtttttgggcagtgaccctccaccccccaagcggctgccgagacacttcagaaatgatgacattcctacagatac attcactccaagggcatatcaggtggagttactggatgcagcattacacagaaataccatagtgtgtttgggttcatcat cagggaataccttcctctccgtaatgctgatacgtgagctgtctgaccagttacgttcaccacttaatgatggaggaaaa agaagcatagttcttgtcaataacgactttctacacgacagtaacgcagtaagtgaaggagaagatgaccaggatccctg ctcaatacccataacagctctctgtgaatgtctacacatactccacacactaggaccttggtgtgcagactgtatagcta agatgctcattaatcaattagaaaaaatagataaatttgaaactggcgtcataaataaaaaacttcttcacttctgttca acacagctacgaatgatttcagcaatatttgattctcagttttcacctaactacgatgtagaagaattactcatgtacac ctctcctaaagttcgaagacttgttcatcacctacgaaaatacaaacctgagtgcgactttatgattattagcagtgccg atggagagctgggtgagggaatgctgggtattgatgatagcgagtctgatctgtctgatgattccgatttctcagaggat gacggaaacgaacgagaaaaccgtaatgtgattcatgtagcggtgaaaaaagaaacaagtgaagagaatggtcttgaccc tttactaggggatacagagaagtacttatgtggcattgtttttgtagaggacagaaatgttgctttggtgctgaataaat ttctagaggaagtgtttgcctgggatgaaactctctgctttgtcaagtcccatcacatcacaggtaaactgaaatatttc aacctgaaagagaatggtaaattgtacaggaaacaagaggatgttttgaggaagtttcgcatgcaggacttgaatctcct tatatccactagtgttctagaggagggtattgatgtacccaagtgcaatcttattgtcaagtttgacccacccaaaagtt acaaatcttacagccagtcaaagggtagagcgagggcacgtaatgcagagtacatggtgctagtgaatgaaagcaagatg gagacatttcagcaagaatatgatattttcaggcatatagaaaaggttctaatcgaaagaaattcagaggaaacgacaca tcagacagagaatcttaatggtgatgacaacagcgatatatctcctccatatataccaaaccctgatcaaccacgcattt ctgtcacactcaactcagctatagctttagtcaacaggtactgtgccaagctacccagtgatgctttcacccacttgaca ccaaaatgctcggtagaggaaattgatgtagagggtagcaccatgtataaagcaaatctccgcttgccaattaactctcc attcaaagaacttgtacaggggtctccaatgcccacagtgatgctagccaaaagagaggtggcactgagaatgtgtgaag ctctccacaagtcaggtgagttagatgataccctgatgccggtaggtaaggagctatacaacatagaggaggaagaggag gaggtgaaggactgggaggcagaggatctgtatggtgaggtcagaccaggaactaccaaacgtaaacagtattactacaa acgggaccctatggaattcaaacctcagcaatcggagcttggttacattgttgtaccacttctcaaaaattctgaaagct gtggacacactattgattgggaattcattagtaaactagagcagtccaagcatcatgtcaaaaggaatatattggactca aagagagaaccgtttgtatttaacaaagaggagtactctgatgctgtagtcatgccgtcctataggaacacagatcaacc ccagccattctatgtggctgaaatccgtagtgatttgaatcctctttctccttttccatccccagagctctatgaaactt tcagcaagtactatacaaccaagtatggtttaacaatcacaaactttgaacagccattgttagatgtagatcatacgtct gcccgattaaatctcctaacaccacgatacatgaaccaaaagggtgttgccttgccaaccagcagtgcagagacgaagaa agctagacgtgagaatttacaacagaaacagatcctggtagctgaactgtgtgaagtacacgtgtttcctgcctcactgt ggaaaaaggcagtatgtctacccactatactgtacagaatcaattacctccttgtggcagaagaaatgagaattaaaatc tccagtgagactggaattggattaagagatctgccaagtgattttgaatttgaaccgttggattttggttttgaaattgt caacggcaaagaaaactttacttctaattctgctgttttggatgaatctaagatggatgatacagaggacagtaatactg aggaatctccgagctcagacaaaggcagctattccacaaacctgagtgacgagtctccaagtgaaaaccacacaaaaacc aacatatctgatcagatctcatctagtcaagctaactgtgatactactcgagttctccagaaacgccggtcatctctaac ggtaggaaacctcttttctagcgagggtcttcaaaattactataataactcagccctctgtgataattctgactgtgata cagatgatgatgaaaccagtgataataaaaaagaaaactccaaagaagatgatcaaagtaaggctagtgattctgtagag gacggggagtgtggtatgaataatcacataaacattcatgataccaaggctagtgacggtaaggctcgtgataaaatttc caaacttagcaatggatcaaaggctgatgataaatctattaatgctttacagcatgaccaaatttcaccaaagaaagaga aaatggtgaatggtgaatcaaatgtttcagcttctgagagcaggttcatgaacggctgggcagatgctgcagacagtaag atggatataacagattatgttactgactccattcaaaaattatctgtgtctgatacagaaaaggacaactccagaagaac atctgatgtaggaaaaagtggaaataaagaggacgttttcagtggaatgtcaaggtttatggctgatggaaaaagtgcga tgactgatacaggaaaaaatatcaaaatgaatgaagagaaaatcagttttcccgatcccaaactttctttagatgaagac aaggacctgaccaagtttgtaggtcctaatccttgtaccatactccaggcctttacaatgtccaatgccaacgatttctt ctgcttagagcgtttggagacaattggtgattcattcctcaatggaatgtcaaggtttatggctgatggaaaaagtgcga tgactgatacaggaaaaaatatcaaaatgaatgaagagaaaatcagttttcccgatcccaaactttctttagatgaagac aaggacctgaccaagtttgtaggtcctaatccttgtaccatactccaggcctttacaatgtccaatgccaacgatttctt ctgcttagagcgtttggagacaattggtgattcattcctcaagtatgccattactgtccatttgtactgtacatatccag gtattcatgaaggcaagttgagctatctacgcagcaagcaggtcagtaattgtaacctttacagactaggtaagaagaaa gggttggcagagtgtatgatctccaccaagtttgagccgtacgagaactggttaccgcctggatatgttatcaacgaatc aaagaggaaaggctcagtacctaaagtgctattgtacaggaatagtatgggtcatctggagaaggtgaatgaccaagccg tcattgattcctatgctacagatgattcctccttgaactggtcaccaaaaataacggagattgtggattcagagggaacc gtcactgagaatgattcacttttaccacagctaatggaggacatagagaggataaagtgtccgtcctctccgtcatccag tgccagcccaaagactatgtcagagctagaagatttactgatcggctacgataaactagaggacagtataggatacaagt ttacagacagattctacctactacaggcattcacacatgcctcttaccactataacactgtgactgattgctatcaaagg ttggagtttcttggagatgctatattggattacatcatcacgcgccatttatatgaagactcgtgtaaatattcaccagg tgtccttacagacctccgatcggctctcgtcaataacaacatctttgctgccctggctgtgaagtgggatttccataaat acttcaaggctatttccccgcctctgtttcacgtcatagaaaaatttgtagccagacagaaagagagagaagatgaaata gatctgagtgatgaagaggagaatgaggaggaggagacagagagggtggagttagaggttcccaaggccctgggggatat ctttgaatcattggctggtgctatctacttagacagtgacaagtatctgaagagcattccaaaatctcctgttagagaat tgttggaaatggaaccagaaactgccaagtttgagaagccagagcggacgttggagggcaagattcgtgtaaatgttaat gtggttggcaaaggtgcatacacaggagtcggcagaaattaccgtattgccaaaagtgcagcagctaaaaaagctctacg ttccattaagaccttacaggcagaggaagttttgaagaaccaattttccatagataactttgtgatatga |
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Protein
| Protein ID | pfu_aug2.0_170.1_00356.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00356.t1 MVFLGSDPPPPKRLPRHFRNDDIPTDTFTPRAYQVELLDAALHRNTIVCLGSSSGNTFLSVMLIRELSDQLRSPLNDGGK RSIVLVNNDFLHDSNAVSEGEDDQDPCSIPITALCECLHILHTLGPWCADCIAKMLINQLEKIDKFETGVINKKLLHFCS TQLRMISAIFDSQFSPNYDVEELLMYTSPKVRRLVHHLRKYKPECDFMIISSADGELGEGMLGIDDSESDLSDDSDFSED DGNERENRNVIHVAVKKETSEENGLDPLLGDTEKYLCGIVFVEDRNVALVLNKFLEEVFAWDETLCFVKSHHITGKLKYF NLKENGKLYRKQEDVLRKFRMQDLNLLISTSVLEEGIDVPKCNLIVKFDPPKSYKSYSQSKGRARARNAEYMVLVNESKM ETFQQEYDIFRHIEKVLIERNSEETTHQTENLNGDDNSDISPPYIPNPDQPRISVTLNSAIALVNRYCAKLPSDAFTHLT PKCSVEEIDVEGSTMYKANLRLPINSPFKELVQGSPMPTVMLAKREVALRMCEALHKSGELDDTLMPVGKELYNIEEEEE EVKDWEAEDLYGEVRPGTTKRKQYYYKRDPMEFKPQQSELGYIVVPLLKNSESCGHTIDWEFISKLEQSKHHVKRNILDS KREPFVFNKEEYSDAVVMPSYRNTDQPQPFYVAEIRSDLNPLSPFPSPELYETFSKYYTTKYGLTITNFEQPLLDVDHTS ARLNLLTPRYMNQKGVALPTSSAETKKARRENLQQKQILVAELCEVHVFPASLWKKAVCLPTILYRINYLLVAEEMRIKI SSETGIGLRDLPSDFEFEPLDFGFEIVNGKENFTSNSAVLDESKMDDTEDSNTEESPSSDKGSYSTNLSDESPSENHTKT NISDQISSSQANCDTTRVLQKRRSSLTVGNLFSSEGLQNYYNNSALCDNSDCDTDDDETSDNKKENSKEDDQSKASDSVE DGECGMNNHINIHDTKASDGKARDKISKLSNGSKADDKSINALQHDQISPKKEKMVNGESNVSASESRFMNGWADAADSK MDITDYVTDSIQKLSVSDTEKDNSRRTSDVGKSGNKEDVFSGMSRFMADGKSAMTDTGKNIKMNEEKISFPDPKLSLDED KDLTKFVGPNPCTILQAFTMSNANDFFCLERLETIGDSFLNGMSRFMADGKSAMTDTGKNIKMNEEKISFPDPKLSLDED KDLTKFVGPNPCTILQAFTMSNANDFFCLERLETIGDSFLKYAITVHLYCTYPGIHEGKLSYLRSKQVSNCNLYRLGKKK GLAECMISTKFEPYENWLPPGYVINESKRKGSVPKVLLYRNSMGHLEKVNDQAVIDSYATDDSSLNWSPKITEIVDSEGT VTENDSLLPQLMEDIERIKCPSSPSSSASPKTMSELEDLLIGYDKLEDSIGYKFTDRFYLLQAFTHASYHYNTVTDCYQR LEFLGDAILDYIITRHLYEDSCKYSPGVLTDLRSALVNNNIFAALAVKWDFHKYFKAISPPLFHVIEKFVARQKEREDEI DLSDEEENEEEETERVELEVPKALGDIFESLAGAIYLDSDKYLKSIPKSPVRELLEMEPETAKFEKPERTLEGKIRVNVN VVGKGAYTGVGRNYRIAKSAAAKKALRSIKTLQAEEVLKNQFSIDNFVI |
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