Gene
| Gene Model ID | pfu_aug2.0_170.1_00360 |
|---|---|
| Locus | scaffold170.1 : 165874 ... 174045 : - |
| To GenomeBrowser | scaffold170.1:165874..174045 |
| Genes list of scaffold | scaffold170.1 |
| Synonym | pfu_aug1.0_1585.1_29776 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_170.1_00360.t1 | 1 | 1 | Img2 | 99 | 183 | 6.9e-22 | 77.4 | 1.7e-25 | 1.3e-21 | 76.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_170.1_00360.t1 | gi|676435903|ref|XP_009047708.1| | hypothetical protein LOTGIDRAFT_139457 [Lottia gigantea] | 7.0e-39 |
| pfu_aug2.0_170.1_00360.t1 | gi|597746962|ref|XP_007235479.1| | PREDICTED: 39S ribosomal protein L49, mitochondrial-like [Astyanax mexicanus] | 2.0e-33 |
| pfu_aug2.0_170.1_00360.t1 | gi|524914104|ref|XP_005111871.1| | PREDICTED: 39S ribosomal protein L49, mitochondrial-like isoform X1 [Aplysia californica] | 4.0e-33 |
| pfu_aug2.0_170.1_00360.t1 | gi|524914106|ref|XP_005111872.1| | PREDICTED: 39S ribosomal protein L49, mitochondrial-like isoform X2 [Aplysia californica] | 6.0e-33 |
| pfu_aug2.0_170.1_00360.t1 | gi|390366826|ref|XP_797620.2| | PREDICTED: 39S ribosomal protein L49, mitochondrial [Strongylocentrotus purpuratus] | 7.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_170.1_00360.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00360.t1 atgtcagcctccataagaagttgtcttttattttacaaaaattcgtttaatatttcaaggaatcgccccattcttcaaca gataagaaatgctctgagtacacaatacgataatacactcaatatagatagatttattcaggaggatgatactgatgcaa tctatgaggtttcaaaggaagattttaaatatgtagaaaaactgatgccacaaaaggtagtacctgaacccccggagcat ccccagtaccccactccctcaggctggtatccacaatcagaagaagcaacaaagctgccatattttatacacagaaccaa aaaccacatgtttcctgtataccctagattgacatttagtaatcaacattctgtaaagataaggaggattgatggagata tttggatgttagaagcagacctaagaaaatatcttgaagaaaaaactaacaaaaaaatgacaatacaagtacaagagatt ggacgagcattatttgtgaaaggtgaatattcggaccacattgtagagtttatgaaagaaaaaggattttga |
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Protein
| Protein ID | pfu_aug2.0_170.1_00360.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00360.t1 MSASIRSCLLFYKNSFNISRNRPILQQIRNALSTQYDNTLNIDRFIQEDDTDAIYEVSKEDFKYVEKLMPQKVVPEPPEH PQYPTPSGWYPQSEEATKLPYFIHRTKNHMFPVYPRLTFSNQHSVKIRRIDGDIWMLEADLRKYLEEKTNKKMTIQVQEI GRALFVKGEYSDHIVEFMKEKGF |
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