Gene
| Gene Model ID | pfu_aug2.0_170.1_00367 |
|---|---|
| Locus | scaffold170.1 : 303421 ... 310551 : + |
| To GenomeBrowser | scaffold170.1:303421..310551 |
| Genes list of scaffold | scaffold170.1 |
| Synonym | pfu_aug1.0_10421.1_02915 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u4 tri-snrnp-associated protein 1 | GO:0005654 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_170.1_00367.t1 | 2 | 1 | SART-1 | 5 | 57 | 0.0 | 221.3 | 0.025 | 370.0 | -0.9 |
| pfu_aug2.0_170.1_00367.t1 | 2 | 2 | SART-1 | 94 | 376 | 0.0 | 221.3 | 0.0 | 0.0 | 221.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_170.1_00367.t1 | gi|742100041|ref|XP_010868952.1| | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1 [Esox lucius] | 0.0 |
| pfu_aug2.0_170.1_00367.t1 | gi|410918002|ref|XP_003972475.1| | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_170.1_00367.t1 | gi|343959930|dbj|BAK63822.1| | U4/U6.U5 tri-snRNP-associated protein 1 [Pan troglodytes] | 0.0 |
| pfu_aug2.0_170.1_00367.t1 | gi|558193323|ref|XP_006129813.1| | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_170.1_00367.t1 | gi|426369209|ref|XP_004051587.1| | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 1-like, partial [Gorilla gorilla gorilla] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_170.1_00367.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00367.t1 atgggttcatcaaagaagcataaagacaaagataaggagcacaaacgaaagcgaaagaaccgatcacgatctcgatcgaa agacaggtcggagagaaagaaacatcggcacggagagcggtctcgggacaagcatgatgaagttgttaatgaattccaag aggagtattcagatgacttttaccctaaagaactcgaagacatcgacagttcagcagtcagaggcgatacaaggacatct tcttcagtgtatcagccatcaagttccagtggtgatctctctctcagcattgaggaaacaaatcgtatcagagcaaagct tggactcaaaccactggaagtaaattatgagtcaaaagcagaagaatctggaggagatgttacgactgtcgatggagata tacacaaacctgccgttagcttgacagaaaaacgggaaactaagaaaatacaggaacgtatacaaaaagctaaggaaaaa agacacctgaaagaaaaactaagtaaagtaaagacattaggggagagtgattcagacgatgacgtcaaggcttgggtgaa gaaaagtcgtgcggtacaaaaagaaagagaaatggcagagaaaagagccaaaatgttagaggagatggaccaggagtttg gagtaggaaaccttattgaagaggagttcaaagattccaaaaaacaatattcctccagagacctgagaggtttgagagta gaacatgacacagagagatttaaggaaggacagacagtcatactgacgctacaagacaaaggagtattggaggatgaagg tgacacattagtcaatgttaacatgattgatgatgagagagcggataaaaataaagaattacgtaagaagaagccggatt ataatccgtacgatgatggtgacgtagacgaatatggcatgttcaggcctaagaaagtcttgtccaaatatgatgaagaa atagaggggttaaagaaggagaagtttgagttgggatctggtgggacgtacgatacagaccaagacagacagatggaact tatacgacaacagctacgtaatcagagccagagtctcgatatatctaacaaactaaaaatagccagcgaatacctcactg aacaggaagtagagactaatacacctaatgatactagtaattga |
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Protein
| Protein ID | pfu_aug2.0_170.1_00367.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00367.t1 MGSSKKHKDKDKEHKRKRKNRSRSRSKDRSERKKHRHGERSRDKHDEVVNEFQEEYSDDFYPKELEDIDSSAVRGDTRTS SSVYQPSSSSGDLSLSIEETNRIRAKLGLKPLEVNYESKAEESGGDVTTVDGDIHKPAVSLTEKRETKKIQERIQKAKEK RHLKEKLSKVKTLGESDSDDDVKAWVKKSRAVQKEREMAEKRAKMLEEMDQEFGVGNLIEEEFKDSKKQYSSRDLRGLRV EHDTERFKEGQTVILTLQDKGVLEDEGDTLVNVNMIDDERADKNKELRKKKPDYNPYDDGDVDEYGMFRPKKVLSKYDEE IEGLKKEKFELGSGGTYDTDQDRQMELIRQQLRNQSQSLDISNKLKIASEYLTEQEVETNTPNDTSN |
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