Gene
| Gene Model ID | pfu_aug2.0_170.1_00368 |
|---|---|
| Locus | scaffold170.1 : 317441 ... 357190 : - |
| To GenomeBrowser | scaffold170.1:317441..357190 |
| Genes list of scaffold | scaffold170.1 |
| Synonym | pfu_aug1.0_3604.1_52033 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear rna export factor 1 | GO:0044428 GO:0050658 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_170.1_00368.t1 | 3 | 1 | Tap-RNA_bind | 145 | 228 | 3.1e-18 | 65.1 | 4.6e-21 | 6.8e-18 | 64.0 |
| pfu_aug2.0_170.1_00368.t1 | 1 | 1 | LRR_8 | 290 | 352 | 5.4e-06 | 26.0 | 9.3e-09 | 1.4e-05 | 24.7 |
| pfu_aug2.0_170.1_00368.t1 | 3 | 2 | Tap-RNA_bind | 399 | 412 | 3.1e-18 | 65.1 | 7.4 | 11000.0 | -4.0 |
| pfu_aug2.0_170.1_00368.t1 | 2 | 1 | NTF2 | 414 | 560 | 1.8e-14 | 54.1 | 3.3e-09 | 4.9e-06 | 26.9 |
| pfu_aug2.0_170.1_00368.t1 | 2 | 1 | TAP_C | 611 | 628 | 1.9e-26 | 91.1 | 1.1e-05 | 0.016 | 14.6 |
| pfu_aug2.0_170.1_00368.t1 | 3 | 3 | Tap-RNA_bind | 665 | 678 | 3.1e-18 | 65.1 | 7.4 | 11000.0 | -4.0 |
| pfu_aug2.0_170.1_00368.t1 | 2 | 2 | NTF2 | 680 | 826 | 1.8e-14 | 54.1 | 1.9e-09 | 2.9e-06 | 27.6 |
| pfu_aug2.0_170.1_00368.t1 | 2 | 2 | TAP_C | 877 | 927 | 1.9e-26 | 91.1 | 2.5e-25 | 3.6e-22 | 77.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_170.1_00368.t1 | gi|507545312|ref|XP_004656622.1| | PREDICTED: nuclear RNA export factor 1 isoform X1 [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_170.1_00368.t1 | gi|507545314|ref|XP_004656623.1| | PREDICTED: nuclear RNA export factor 1 isoform X2 [Jaculus jaculus] | 0.0 |
| pfu_aug2.0_170.1_00368.t1 | gi|291409514|ref|XP_002721042.1| | PREDICTED: nuclear RNA export factor 1 [Oryctolagus cuniculus] | 0.0 |
| pfu_aug2.0_170.1_00368.t1 | gi|507948121|ref|XP_004682761.1| | PREDICTED: nuclear RNA export factor 1 [Condylura cristata] | 0.0 |
| pfu_aug2.0_170.1_00368.t1 | gi|504174510|ref|XP_004596816.1| | PREDICTED: nuclear RNA export factor 1 [Ochotona princeps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_170.1_00368.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00368.t1 atgagcaatttctcagtaacgacagaaaggagtggaaggagaacgtttggtgaacatgacgatagatggtcagataacag aggaggtgggaagttcagaggtaaccgtggtaacaagaagtttaactccagaggacgcggatcatttaggagtgggagtg gttacagaggagggggaggaggaggttataaagggagaggcaatagaggatattatgctggaagagatgggtataaaaga ggtagaggtggcagctttggtcctcgtagccgacttgaagacgatgatggagacatcagtatgaacgataacagacctgc aagtagcaaaagatttagtccatatagaggaggtagatcaaacagaggacaaaaatactacggagatgacaatccctcag gtttcagcagaccaggtcctcacccatcaggcaagaatacttggtacaaagttacgattccaaaggcaaaaacggctggg aaagaattcattttaaaaacgctcagtgaaaatgtagaatacagtttcacacctgttaattttcactttgagcaagagaa agctgtgtttcatgttcaggataaacaggttacatcagcactacattccttaagttcaaggatacccatgcccagtggta tgaagatgttgtttctgatcaaacctgatagagctccactttttgttagtgatgaagaaacagaaaaactgaaggttgtc atgagtaacagatatgatccttcaacaaaatctctgaatttaacaagcttatcatcagatcagagtttacagtcagatgg aatgacaatgaatctttcagcagctcatgtaatgacgtgtgtagtcaaaatcatacaggaaaacattcctgagttggaat gcctagatgttagtcagaaccacatatttaaactagatggtctgagttctctggtagaacacacaccaaacttgaccaaa ctcaacctgggagctaataaactgagttatatagaggagttgaggtgtctctataaatggaaactgaccgagttaaacct ggacggcaatgagttatgtgataagtttaaggaccagtcatcgtatgtgagtgcaataaggaagaagtttccaaaagtcc ttagactggatggccatgacctaccacctcccatcaagtttgaccttgaaactcagtcagaactaccagactcaaaggga aatttctttgtaaatgatgaggtgaagacattagttgtgagatttctgaaggaatttttcactatctatgattctgacaa cagacagccactgatgcatgcttatgaggaaaatgcattattttctctcactgcagcttttaacccaaacattgaataca gccagccgaaactgagcgtgtacattgtggatagcagaaatatgctcaagaacagagataacgcacggcagaataaatgt ctgaagaagggacagttaaacgtagtctcccacctgacacagttacctaagaccacacatgattataattcctttgttat agatgtagatcattgctcgcaaaatttactgagtttttctgtggaaggagttttcaaggaaggtgacagtaaatctgaca gaccacctgtacgatcattcagcagaagatttgttacaattcctagaggtggtgggatggtgatttctaatgacatgtta acaataacaaatgccagtagagatcagtaccagaaagcatttaagcacccagcacccaccccttcatcaagtcctgtccc tgatgcctccccagcgccccccttcccgtctgctactcctcaggctggggctgcgtttagtgatttacaacaacagatgg tagccaagttctctgaggtatcaggcatgaacaatgagtggtctgtaaatgcaataaggaagaagtttccaaaagtcctt agactggatggccatgacctaccacctcccatcaagtttgaccttgaaactcagtctgaactaccagactcaaagggaaa tttctttgtaaatgatgaggtgaagacattagttgtgagatttctgaaggaatttttcactatctatgattctgacaaca gacagcctctgatgcatgcttatgaggaaaatgcattattttctctcactgcagcctttaaccccaacattgagtacagc cagcctaaactgagcgtgtacatcgtggatagcagaaatatgctcaagaacagagataacacacggcagaataaatgcct gaagaagggacagttaaacgtagtctcccacctgacacagttaccaaagaccacacatgattataattcctttgttatag acgtggatcattgctcgcaaaatttactgagtttttccgtggaaggagttttcaaggaaggtgacagtaaatccgacaga ccacctgtacgatcattcagcagaagatttgttaccattcctagaggtggtgggatggtgatttccaatgacatgttaac aattacaaatgccagtagagatcagtatcagaaagcatttaagcacccagcacccaccccttcatcaagtcctgtccctg acgcctccccagcagcccccttcccgtctgcgactcctcaggctggggctgcgtttagtgatttacaacaacagatggta gccaagttctccgaggtatcaggcatgaacagtgagtggtctgtaaattgcctagagcagaataactgggattttgaaaa agcaggccaagtgtttatggacttaaagaaccaaaataagattccaccagaagcttttgtgaagtga |
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Protein
| Protein ID | pfu_aug2.0_170.1_00368.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_170.1_00368.t1 MSNFSVTTERSGRRTFGEHDDRWSDNRGGGKFRGNRGNKKFNSRGRGSFRSGSGYRGGGGGGYKGRGNRGYYAGRDGYKR GRGGSFGPRSRLEDDDGDISMNDNRPASSKRFSPYRGGRSNRGQKYYGDDNPSGFSRPGPHPSGKNTWYKVTIPKAKTAG KEFILKTLSENVEYSFTPVNFHFEQEKAVFHVQDKQVTSALHSLSSRIPMPSGMKMLFLIKPDRAPLFVSDEETEKLKVV MSNRYDPSTKSLNLTSLSSDQSLQSDGMTMNLSAAHVMTCVVKIIQENIPELECLDVSQNHIFKLDGLSSLVEHTPNLTK LNLGANKLSYIEELRCLYKWKLTELNLDGNELCDKFKDQSSYVSAIRKKFPKVLRLDGHDLPPPIKFDLETQSELPDSKG NFFVNDEVKTLVVRFLKEFFTIYDSDNRQPLMHAYEENALFSLTAAFNPNIEYSQPKLSVYIVDSRNMLKNRDNARQNKC LKKGQLNVVSHLTQLPKTTHDYNSFVIDVDHCSQNLLSFSVEGVFKEGDSKSDRPPVRSFSRRFVTIPRGGGMVISNDML TITNASRDQYQKAFKHPAPTPSSSPVPDASPAPPFPSATPQAGAAFSDLQQQMVAKFSEVSGMNNEWSVNAIRKKFPKVL RLDGHDLPPPIKFDLETQSELPDSKGNFFVNDEVKTLVVRFLKEFFTIYDSDNRQPLMHAYEENALFSLTAAFNPNIEYS QPKLSVYIVDSRNMLKNRDNTRQNKCLKKGQLNVVSHLTQLPKTTHDYNSFVIDVDHCSQNLLSFSVEGVFKEGDSKSDR PPVRSFSRRFVTIPRGGGMVISNDMLTITNASRDQYQKAFKHPAPTPSSSPVPDASPAAPFPSATPQAGAAFSDLQQQMV AKFSEVSGMNSEWSVNCLEQNNWDFEKAGQVFMDLKNQNKIPPEAFVK |
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