Gene
| Gene Model ID | pfu_aug2.0_1707.1_25095 |
|---|---|
| Locus | scaffold1707.1 : 9516 ... 15230 : + |
| To GenomeBrowser | scaffold1707.1:9516..15230 |
| Genes list of scaffold | scaffold1707.1 |
| Synonym | pfu_aug1.0_5570.1_52571 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0030529 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1707.1_25095.t1 | 2 | 1 | Ribosomal_L11 | 6 | 14 | 1.1e-22 | 79.9 | 1.6 | 12000.0 | -3.5 |
| pfu_aug2.0_1707.1_25095.t1 | 1 | 1 | Ribosomal_L11_N | 27 | 85 | 1.3e-23 | 82.2 | 3.8e-27 | 2.9e-23 | 81.1 |
| pfu_aug2.0_1707.1_25095.t1 | 2 | 2 | Ribosomal_L11 | 92 | 161 | 1.1e-22 | 79.9 | 1.4e-26 | 1.1e-22 | 79.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1707.1_25095.t1 | gi|675881960|ref|XP_009026482.1| | hypothetical protein HELRODRAFT_86877 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_1707.1_25095.t1 | gi|512887079|ref|XP_004921863.1| | 0.0 | |
| pfu_aug2.0_1707.1_25095.t1 | gi|662197738|ref|XP_008471963.1| | PREDICTED: 39S ribosomal protein L11, mitochondrial [Diaphorina citri] | 0.0 |
| pfu_aug2.0_1707.1_25095.t1 | gi|512887074|ref|XP_004921862.1| | PREDICTED: 39S ribosomal protein L11, mitochondrial [Bombyx mori] | 0.0 |
| pfu_aug2.0_1707.1_25095.t1 | gi|91086019|ref|XP_972971.1| | PREDICTED: 39S ribosomal protein L11, mitochondrial [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1707.1_25095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1707.1_25095.t1 atggcatcgagaaaagcagcaggtgctgcgaagcaggtcatgaaaaagaaggtcgccaagaaagttgatcaccctcccta tcttaaactaagaatccctgcaggagaggcatcacccgctccacctgtcgggcctcagcttgcccagagatcaatacaga ttccggcattcatcaaagaattcaatgaaaagaccaaggatataaaagaaggtttacccattccaactgaagtctttata aatcctgacagatcaataagaatggttctgtacaaaccagaagtaaactattttctgaagcaggcggctggaataaagaa agggaggataaaaggaggagatgaagtagctggaatgttatcactaaagcatatttatgaaattgctaaaatcaaacaga ctgacgataacttttctggaaaaacgttatacgaaatatgtaaagacattatcggaactgcacattcattagggattcaa gtagtgagggaactgaagccggaagaatatggagaatttcttaaagagagaaacaagtttgttgaagagtgcgagagaga actagaggaggcaagacaagctaaattgttacgattgtga |
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Protein
| Protein ID | pfu_aug2.0_1707.1_25095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1707.1_25095.t1 MASRKAAGAAKQVMKKKVAKKVDHPPYLKLRIPAGEASPAPPVGPQLAQRSIQIPAFIKEFNEKTKDIKEGLPIPTEVFI NPDRSIRMVLYKPEVNYFLKQAAGIKKGRIKGGDEVAGMLSLKHIYEIAKIKQTDDNFSGKTLYEICKDIIGTAHSLGIQ VVRELKPEEYGEFLKERNKFVEECERELEEARQAKLLRL |
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