Gene
| Gene Model ID | pfu_aug2.0_1707.1_25096 |
|---|---|
| Locus | scaffold1707.1 : 21102 ... 30095 : - |
| To GenomeBrowser | scaffold1707.1:21102..30095 |
| Genes list of scaffold | scaffold1707.1 |
| Synonym | pfu_aug1.0_5570.1_52572 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ribosomal rna processing protein 36 homolog | GO:0005634 GO:0042254 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1707.1_25096.t1 | 3 | 1 | DUF947 | 21 | 22 | 0.0 | 162.8 | 0.59 | 8800.0 | -3.7 |
| pfu_aug2.0_1707.1_25096.t1 | 3 | 2 | DUF947 | 75 | 138 | 0.0 | 162.8 | 0.53 | 7900.0 | -3.5 |
| pfu_aug2.0_1707.1_25096.t1 | 3 | 3 | DUF947 | 169 | 335 | 0.0 | 162.8 | 0.0 | 0.0 | 162.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1707.1_25096.t1 | gi|260791728|ref|XP_002590880.1| | hypothetical protein BRAFLDRAFT_269866 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1707.1_25096.t1 | gi|585674973|ref|XP_006818699.1| | PREDICTED: ribosomal RNA processing protein 36 homolog isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1707.1_25096.t1 | gi|742107867|ref|XP_010871364.1| | PREDICTED: ribosomal RNA processing protein 36 homolog [Esox lucius] | 0.0 |
| pfu_aug2.0_1707.1_25096.t1 | gi|602631659|ref|XP_007422728.1| | PREDICTED: ribosomal RNA processing protein 36 homolog isoform X1 [Python bivittatus] | 0.0 |
| pfu_aug2.0_1707.1_25096.t1 | gi|573901803|ref|XP_006638627.1| | PREDICTED: ribosomal RNA processing protein 36 homolog [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1707.1_25096.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1707.1_25096.t1 atgtctctcagtcgtcagaagaaactgaaagatgaaggaagaattagaactgatcataaaacaatgaagactacacaaaa tttcaaacatagaaaaaatgatagacctagaagtagaacctttggagatctatcaaatccagctgatgacgatgtcagtg atgatgattctggagatgagatgcctaatgttgcatcttctagaagaaaaagaaaacaaaacgcttcaaaacatagtgac agcattgtagatgacaatgatgatgaagaagatgttgatatgtctgaagaagaagaagaagaagaagaggatatgagaaa agatgaggagagtgatgatatgcaagatgaagaggaggaggaggatccttatgcggcagttagagaagaaatatcctctt tatcttttgaagaacttcagctgcttaaagacaagcttggcctaaaagtctttcaccaaattatgagaggaaaaagagaa gaagagaaagggaaaaaagtctacaaaagagaaaataaaaacaggcctatggagatgtcatcaaaacgtccagtgcccag attcagagaaattgttactgtcaagaaaaaggccaagagagatccacggtttgatgacttgtctggagaatttaatccac atatatttagtaaaacttactcattcctaggtgatgttaaaattcgagaaaaagaggttattcagaaaaagctgaaaaaa gagaaggatccagagaggaaacaagagatgcaatatttgctgaacagaatgaagcagcaagaaatgagtgaacaacagaa acagaagaagacagaattagagaaagaatggaagaaaagggagcaggaaaaagtggctaaagatggaaaaacaccttatt atctaaagaaatctgatctgaggaaacttgagctggcagagaagtataaagagctgaagaaaacgggaaaagtagataag tacctaagtaagaagaggaagaagacagcacagaaagagaagaaacatcttcctacatga |
|
Protein
| Protein ID | pfu_aug2.0_1707.1_25096.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1707.1_25096.t1 MSLSRQKKLKDEGRIRTDHKTMKTTQNFKHRKNDRPRSRTFGDLSNPADDDVSDDDSGDEMPNVASSRRKRKQNASKHSD SIVDDNDDEEDVDMSEEEEEEEEDMRKDEESDDMQDEEEEEDPYAAVREEISSLSFEELQLLKDKLGLKVFHQIMRGKRE EEKGKKVYKRENKNRPMEMSSKRPVPRFREIVTVKKKAKRDPRFDDLSGEFNPHIFSKTYSFLGDVKIREKEVIQKKLKK EKDPERKQEMQYLLNRMKQQEMSEQQKQKKTELEKEWKKREQEKVAKDGKTPYYLKKSDLRKLELAEKYKELKKTGKVDK YLSKKRKKTAQKEKKHLPT |
|