Gene
| Gene Model ID | pfu_aug2.0_171.1_03741 |
|---|---|
| Locus | scaffold171.1 : 238030 ... 242619 : + |
| To GenomeBrowser | scaffold171.1:238030..242619 |
| Genes list of scaffold | scaffold171.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerases and iii subunit partial | GO:0003677 GO:0003899 GO:0005665 GO:0006351 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_171.1_03741.t1 | 1 | 1 | RNA_pol_Rpb6 | 40 | 96 | 5.3e-22 | 77.3 | 5.7e-26 | 8.4e-22 | 76.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_171.1_03741.t1 | gi|697440238|ref|XP_009663623.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_171.1_03741.t1 | gi|556997074|ref|XP_006002008.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_171.1_03741.t1 | gi|241558215|ref|XP_002400181.1| | RNA polymerase subunit K, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_171.1_03741.t1 | gi|701344853|ref|XP_010004024.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Chaetura pelagica] | 0.0 |
| pfu_aug2.0_171.1_03741.t1 | gi|699671890|ref|XP_009900876.1| | PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC2, partial [Picoides pubescens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_171.1_03741.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_171.1_03741.t1 atggtggcaatagaagtggaggaaaatcagcttgatttaccagggaatttacctgtgtttgatggtgatcgtgtagatat tctgcctgctgatccaacacagcccgtggaaccaaagaaacgtataacaacaccgtacctcacaaaatatgagagagcca gagtgttgggtacaagggcactacagattgctatgtgtgctccagttatggtagaattagaaggagagactgatccttta gttattgcaatgaaagaactcaaagcaagaaaaattccaataatcattcgacgctacttaccagacggcagttttgaaga ctgggcagtggatgaacttatgatgacagagtga |
|
Protein
| Protein ID | pfu_aug2.0_171.1_03741.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_171.1_03741.t1 MVAIEVEENQLDLPGNLPVFDGDRVDILPADPTQPVEPKKRITTPYLTKYERARVLGTRALQIAMCAPVMVELEGETDPL VIAMKELKARKIPIIIRRYLPDGSFEDWAVDELMMTE |
|